Cargando…

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

BACKGROUND: Although genes on the chromosome are organized in a fixed order, the spatial correlations in transcription have not been systematically evaluated. We used a combination of genomic and signal processing techniques to investigate the properties of transcription in the genome of Escherichia...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jeong, Kyeong Soo, Ahn, Jaeyong, Khodursky, Arkady B
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2004
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC545777/ https://www.ncbi.nlm.nih.gov/pubmed/15535862 http://dx.doi.org/10.1186/gb-2004-5-11-r86

Ejemplares similares

Transient Growth Arrest in Escherichia coli Induced by Chromosome Condensation
por: Edwards, Andrea L., et al.
Publicado: (2013)

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
por: Peter, Brian J, et al.
Publicado: (2004)

RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli
por: Reckinger, Amy R., et al.
Publicado: (2007)

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
por: Zare, Hossein, et al.
Publicado: (2009)

Analysis of Pleiotropic Transcriptional Profiles: A Case Study of DNA Gyrase Inhibition
por: Jeong, Kyeong Soo, et al.
Publicado: (2006)

Perturbed states of the bacterial chromosome: a thymineless death case study
por: Ostrer, Lev, et al.
Publicado: (2015)

Inferring a Transcriptional Regulatory Network from Gene Expression Data Using Nonlinear Manifold Embedding
por: Zare, Hossein, et al.
Publicado: (2011)

An evolutionarily biased distribution of miRNA sites toward regulatory genes with high promoter-driven intrinsic transcriptional noise
por: Zare, Hossein, et al.
Publicado: (2014)

A Case Study on Choosing Normalization Methods and Test Statistics for Two-Channel Microarray Data
por: Xie, Yang, et al.
Publicado: (2004)

Persisters: a distinct physiological state of E. coli
por: Shah, Devang, et al.
Publicado: (2006)

Spatial coordination between chromosomes and cell division proteins in Escherichia coli
por: Männik, Jaan, et al.
Publicado: (2015)

The spatial biology of transcription and translation in rapidly growing Escherichia coli
por: Bakshi, Somenath, et al.
Publicado: (2015)

Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
por: Zhang, Zhigang, et al.
Publicado: (2008)

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription
por: Cagliero, Cedric, et al.
Publicado: (2013)

Comparison of Fitness Cost and Virulence in Chromosome- and Plasmid-Mediated Colistin-Resistant Escherichia coli
por: Choi, Yujin, et al.
Publicado: (2020)

Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio
por: Lintner, Robert E, et al.
Publicado: (2008)

Genomic patterns and characterizations of chromosomally-encoded mcr-1 in Escherichia coli populations
por: Shen, Cong, et al.
Publicado: (2020)

Model of Transcriptional Activation by MarA in Escherichia coli
por: Wall, Michael E., et al.
Publicado: (2009)

The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug Trimethoprim
por: Sangurdekar, Dipen P, et al.
Publicado: (2011)

Transcriptional Potential Determines the Adaptability of Escherichia coli Strains with Different Fitness Backgrounds
por: Kim, Kitae, et al.
Publicado: (2022)

Construction of consecutive deletions of the Escherichia coli chromosome
por: Kato, Jun-ichi, et al.
Publicado: (2007)

Chromosome Replication in Escherichia coli: Life on the Scales
por: Norris, Vic, et al.
Publicado: (2012)

Chromosome segregation by the Escherichia coli Min system
por: Di Ventura, Barbara, et al.
Publicado: (2013)

Spatial features for Escherichia coli genome organization
por: Xie, Ting, et al.
Publicado: (2015)

Chromosome Structuring Limits Genome Plasticity in Escherichia coli
por: Esnault, Emilie, et al.
Publicado: (2007)

Replication-directed sister chromosome alignment in Escherichia coli
por: Liu, Xun, et al.
Publicado: (2010)

Chromosomal evolution of Escherichia coli for the efficient production of lycopene
por: Chen, Yun-Yan, et al.
Publicado: (2013)

Shaping the landscape of the Escherichia coli chromosome: replication-transcription encounters in cells with an ectopic replication origin
por: Ivanova, Darja, et al.
Publicado: (2015)

Escherichia coli cell factories with altered chromosomal replication scenarios exhibit accelerated growth and rapid biomass production
por: Yang, Hee Jin, et al.
Publicado: (2022)

A classification based framework for quantitative description of large-scale microarray data
por: Sangurdekar, Dipen P, et al.
Publicado: (2006)

A CRISPR-based chromosomal-separation technique for Escherichia coli
por: Su, Junchang, et al.
Publicado: (2022)

Depletion of acidic phospholipids influences chromosomal replication in Escherichia coli
por: Fingland, Nicholas, et al.
Publicado: (2012)

Chromosomal periodicity and positional networks of genes in Escherichia coli
por: Mathelier, Anthony, et al.
Publicado: (2010)

Consequences of Cas9 cleavage in the chromosome of Escherichia coli
por: Cui, Lun, et al.
Publicado: (2016)

Transcriptional effects of CRP* expression in Escherichia coli
por: Khankal, Reza, et al.
Publicado: (2009)

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation
por: Fritsche, Miriam, et al.
Publicado: (2012)

Widespread Antisense Transcription in Escherichia coli
por: Dornenburg, James E., et al.
Publicado: (2010)

Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex
por: Kang, Jin Young, et al.
Publicado: (2017)

Ranges of control in the transcriptional regulation of Escherichia coli
por: Sonnenschein, Nikolaus, et al.
Publicado: (2009)

Transcriptional cross-activation between toxin-antitoxin systems of Escherichia coli
por: Kasari, Villu, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_23r53a928nbj4k9do12sphegua