Cargando…

Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana

We present a novel graphical Gaussian modeling approach for reverse engineering of genetic regulatory networks with many genes and few observations. When applying our approach to infer a gene network for isoprenoid biosynthesis in Arabidopsis thaliana, we detect modules of closely connected genes an...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wille, Anja, Zimmermann, Philip, Vranová, Eva, Fürholz, Andreas, Laule, Oliver, Bleuler, Stefan, Hennig, Lars, Prelić, Amela, von Rohr, Peter, Thiele, Lothar, Zitzler, Eckart, Gruissem, Wilhelm, Bühlmann, Peter
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2004
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC545783/ https://www.ncbi.nlm.nih.gov/pubmed/15535868 http://dx.doi.org/10.1186/gb-2004-5-11-r92

Ejemplares similares

A Partial Correlation Screening Approach for Controlling the False Positive Rate in Sparse Gaussian Graphical Models
por: Lafit, Ginette, et al.
Publicado: (2019)

The ‘un-shrunk’ partial correlation in Gaussian graphical models
por: Bernal, Victor, et al.
Publicado: (2021)

Genevestigator V3: A Reference Expression Database for the Meta-Analysis of Transcriptomes
por: Hruz, Tomas, et al.
Publicado: (2008)

Exact hypothesis testing for shrinkage-based Gaussian graphical models
por: Bernal, Victor, et al.
Publicado: (2019)

An algorithm for separation of mixed sparse and Gaussian sources
por: Akkalkotkar, Ameya, et al.
Publicado: (2017)

GeneNetTools: tests for Gaussian graphical models with shrinkage
por: Bernal, Victor, et al.
Publicado: (2022)

Global regulatory architecture of human, mouse and rat tissue transcriptomes
por: Prasad, Ajay, et al.
Publicado: (2013)

A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks
por: Hruz, Tomas, et al.
Publicado: (2013)

Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome
por: Beleut, Manfred, et al.
Publicado: (2012)

Correlated product of experts for sparse Gaussian process regression
por: Schürch, Manuel, et al.
Publicado: (2023)

Fast Bayesian inference in large Gaussian graphical models
por: Leday, Gwenaël G. R., et al.
Publicado: (2019)

Model-based clustering based on sparse finite Gaussian mixtures
por: Malsiner-Walli, Gertraud, et al.
Publicado: (2014)

Variational Bayesian Pansharpening with Super-Gaussian Sparse Image Priors
por: Pérez-Bueno, Fernando, et al.
Publicado: (2020)

Metabolic engineering for the microbial production of isoprenoids: Carotenoids and isoprenoid-based biofuels
por: Niu, Fu-Xing, et al.
Publicado: (2017)

Cancer Genetic Network Inference Using Gaussian Graphical Models
por: Zhao, Haitao, et al.
Publicado: (2019)

Penalized estimation of the Gaussian graphical model from data with replicates
por: van Wieringen, Wessel N., et al.
Publicado: (2021)

Bayesian Covariate-Dependent Gaussian Graphical Models with Varying Structure
por: Ni, Yang, et al.
Publicado: (2022)

On the Origin of Isoprenoid Biosynthesis
por: Hoshino, Yosuke, et al.
Publicado: (2018)

A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems
por: Hohm, Tim, et al.
Publicado: (2010)

Knot selection in sparse Gaussian processes with a variational objective function
por: Garton, Nathaniel, et al.
Publicado: (2020)

Learning Transcriptional Regulatory Relationships Using Sparse Graphical Models
por: Zhang, Xiang, et al.
Publicado: (2012)

Joint conditional Gaussian graphical models with multiple sources of genomic data
por: Chun, Hyonho, et al.
Publicado: (2013)

Node-Structured Integrative Gaussian Graphical Model Guided by Pathway Information
por: Kim, SungHwan, et al.
Publicado: (2017)

Joint Microbial and Metabolomic Network Estimation with the Censored Gaussian Graphical Model
por: Ma, Jing
Publicado: (2020)

Exact biclustering algorithm for the analysis of large gene expression data sets
por: Voggenreiter, Oliver, et al.
Publicado: (2012)

Understanding human functioning using graphical models
por: Kalisch, Markus, et al.
Publicado: (2010)

Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
por: Dahinden, Corinne, et al.
Publicado: (2007)

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model
por: Ingkasuwan, Papapit, et al.
Publicado: (2012)

Specifying a Gaussian Markov random field by a sparse Cholesky triangle
por: Wist, H T, et al.
Publicado: (2005)

Sparse multi-output Gaussian processes for online medical time series prediction
por: Cheng, Li-Fang, et al.
Publicado: (2020)

Kernel-based Gaussian process for anomaly detection in sparse gamma-ray data
por: Romanchek, Gregory R., et al.
Publicado: (2020)

Variational Sparse Bayesian Learning for Estimation of Gaussian Mixture Distributed Wireless Channels
por: Kong, Lingjin, et al.
Publicado: (2021)

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks
por: Wang, Ting, et al.
Publicado: (2016)

Joint estimation of multiple dependent Gaussian graphical models with applications to mouse genomics
por: Xie, Yuying, et al.
Publicado: (2016)

Graphical Model Selection for Gaussian Conditional Random Fields in the Presence of Latent Variables
por: Frot, Benjamin, et al.
Publicado: (2018)

Clustering Single-Cell RNA-Seq Data with Regularized Gaussian Graphical Model
por: Liu, Zhenqiu
Publicado: (2021)

Dietary networks identified by Gaussian graphical model and general and abdominal obesity in adults
por: Jayedi, Ahmad, et al.
Publicado: (2021)

Path-level interpretation of Gaussian graphical models using the pair-path subscore
por: Gill, Nathan P., et al.
Publicado: (2022)

Identifying oscillatory brain networks with hidden Gaussian graphical spectral models of MEEG
por: Paz-Linares, Deirel, et al.
Publicado: (2023)

Evolutionary algorithms for the selection of single nucleotide polymorphisms
por: Hubley, Robert M, et al.
Publicado: (2003)

Cannot write session to /tmp/vufind_sessions/sess_m36rb8d7jj8g3m8s3rbgcsjoc1