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Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression
BACKGROUND: The aim of this study was to explore the underlying molecular mechanism and potential molecular biomarkers of chronic pancreatitis (CP) and construct a miRNA-mRNA regulation network. METHODS: To explore the involvement of miRNAs in CP, we downloaded the miRNA and mRNA expression profiles...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer Health
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457847/ https://www.ncbi.nlm.nih.gov/pubmed/28538367 http://dx.doi.org/10.1097/MD.0000000000006668 |
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author | Wang, Dan Xin, Lei Lin, Jin-Huan Liao, Zhuan Ji, Jun-Tao Du, Ting-Ting Jiang, Fei Li, Zhao-Shen Hu, Liang-Hao |
author_facet | Wang, Dan Xin, Lei Lin, Jin-Huan Liao, Zhuan Ji, Jun-Tao Du, Ting-Ting Jiang, Fei Li, Zhao-Shen Hu, Liang-Hao |
author_sort | Wang, Dan |
collection | PubMed |
description | BACKGROUND: The aim of this study was to explore the underlying molecular mechanism and potential molecular biomarkers of chronic pancreatitis (CP) and construct a miRNA-mRNA regulation network. METHODS: To explore the involvement of miRNAs in CP, we downloaded the miRNA and mRNA expression profiles of CP patients and healthy controls and identified the differentially expressed miRNAs and genes. Functional analysis was conducted and significant pathways were utilized. Finally, the miRNA-mRNA regulation network of CP was constructed. RESULTS: A total of 44 miRNA risk gene pathway relationships were identified, and a complex regulation network was constructed with 3 genes (ABL1, MYC, and ANAPC13) having the highest degree in affecting the network of CP. Importantly, 4 risk genes (NOTCH3, COX5A, THBS1, and KARS) and 1 risk miRNA (hsa-miR-324-5p) were identified with high prediction accuracy. CONCLUSIONS: In conclusion, we analyzed miRNAs and mRNAs expression profiles in CP, 1 risk miRNA, and 4 risk genes were identified with high prediction accuracy as biomarkers of CP. Although further evaluation in clinical study is needed, our findings provide new insights into the pathogenesis of CP and may improve the diagnosis and therapy by identifying novel targets. |
format | Online Article Text |
id | pubmed-5457847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Wolters Kluwer Health |
record_format | MEDLINE/PubMed |
spelling | pubmed-54578472017-06-09 Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression Wang, Dan Xin, Lei Lin, Jin-Huan Liao, Zhuan Ji, Jun-Tao Du, Ting-Ting Jiang, Fei Li, Zhao-Shen Hu, Liang-Hao Medicine (Baltimore) 4500 BACKGROUND: The aim of this study was to explore the underlying molecular mechanism and potential molecular biomarkers of chronic pancreatitis (CP) and construct a miRNA-mRNA regulation network. METHODS: To explore the involvement of miRNAs in CP, we downloaded the miRNA and mRNA expression profiles of CP patients and healthy controls and identified the differentially expressed miRNAs and genes. Functional analysis was conducted and significant pathways were utilized. Finally, the miRNA-mRNA regulation network of CP was constructed. RESULTS: A total of 44 miRNA risk gene pathway relationships were identified, and a complex regulation network was constructed with 3 genes (ABL1, MYC, and ANAPC13) having the highest degree in affecting the network of CP. Importantly, 4 risk genes (NOTCH3, COX5A, THBS1, and KARS) and 1 risk miRNA (hsa-miR-324-5p) were identified with high prediction accuracy. CONCLUSIONS: In conclusion, we analyzed miRNAs and mRNAs expression profiles in CP, 1 risk miRNA, and 4 risk genes were identified with high prediction accuracy as biomarkers of CP. Although further evaluation in clinical study is needed, our findings provide new insights into the pathogenesis of CP and may improve the diagnosis and therapy by identifying novel targets. Wolters Kluwer Health 2017-05-26 /pmc/articles/PMC5457847/ /pubmed/28538367 http://dx.doi.org/10.1097/MD.0000000000006668 Text en Copyright © 2017 the Author(s). Published by Wolters Kluwer Health, Inc. http://creativecommons.org/licenses/by-sa/4.0 This is an open access article distributed under the Creative Commons Attribution-ShareAlike License 4.0, which allows others to remix, tweak, and build upon the work, even for commercial purposes, as long as the author is credited and the new creations are licensed under the identical terms. http://creativecommons.org/licenses/by-sa/4.0 |
spellingShingle | 4500 Wang, Dan Xin, Lei Lin, Jin-Huan Liao, Zhuan Ji, Jun-Tao Du, Ting-Ting Jiang, Fei Li, Zhao-Shen Hu, Liang-Hao Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title | Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title_full | Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title_fullStr | Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title_full_unstemmed | Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title_short | Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression |
title_sort | identifying mirna-mrna regulation network of chronic pancreatitis based on the significant functional expression |
topic | 4500 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457847/ https://www.ncbi.nlm.nih.gov/pubmed/28538367 http://dx.doi.org/10.1097/MD.0000000000006668 |
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