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Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects
A new method to correct formation energies of charged defects obtained by supercell density-functional calculations is presented and applied to bulk, surface, and low-dimensional systems. The method relies on atomistic models and a polarizable force field to describe a material system and its dielec...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460149/ https://www.ncbi.nlm.nih.gov/pubmed/28588279 http://dx.doi.org/10.1038/s41598-017-02986-5 |
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author | Cao, Tengfei Bongiorno, Angelo |
author_facet | Cao, Tengfei Bongiorno, Angelo |
author_sort | Cao, Tengfei |
collection | PubMed |
description | A new method to correct formation energies of charged defects obtained by supercell density-functional calculations is presented and applied to bulk, surface, and low-dimensional systems. The method relies on atomistic models and a polarizable force field to describe a material system and its dielectric properties. The polarizable force field is based on a minimal set of fitting parameters, it accounts for the dielectric screening arising from ions and electrons separately, and it can be easily implemented in any software for atomistic molecular dynamics simulations. This work illustrates both technical aspects and applications of the new corrective scheme. The method is tested on systems in vacuo to validate the energy scheme. It is applied to charged defects in the bulk and at the surface of realistic materials to achieve comparison with published results obtained by using available corrective schemes based on continuum electrostatics treatments. Moreover, to demonstrate its generality, the method is used to correct the formation energy obtained by DFT of a singly negatively charged S vacancy in monolayer, bilayer, trilayer and bulk MoS(2). |
format | Online Article Text |
id | pubmed-5460149 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54601492017-06-06 Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects Cao, Tengfei Bongiorno, Angelo Sci Rep Article A new method to correct formation energies of charged defects obtained by supercell density-functional calculations is presented and applied to bulk, surface, and low-dimensional systems. The method relies on atomistic models and a polarizable force field to describe a material system and its dielectric properties. The polarizable force field is based on a minimal set of fitting parameters, it accounts for the dielectric screening arising from ions and electrons separately, and it can be easily implemented in any software for atomistic molecular dynamics simulations. This work illustrates both technical aspects and applications of the new corrective scheme. The method is tested on systems in vacuo to validate the energy scheme. It is applied to charged defects in the bulk and at the surface of realistic materials to achieve comparison with published results obtained by using available corrective schemes based on continuum electrostatics treatments. Moreover, to demonstrate its generality, the method is used to correct the formation energy obtained by DFT of a singly negatively charged S vacancy in monolayer, bilayer, trilayer and bulk MoS(2). Nature Publishing Group UK 2017-06-06 /pmc/articles/PMC5460149/ /pubmed/28588279 http://dx.doi.org/10.1038/s41598-017-02986-5 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Cao, Tengfei Bongiorno, Angelo Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title | Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title_full | Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title_fullStr | Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title_full_unstemmed | Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title_short | Atomistic Corrective Scheme for Supercell Density Functional Theory Calculations of Charged Defects |
title_sort | atomistic corrective scheme for supercell density functional theory calculations of charged defects |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460149/ https://www.ncbi.nlm.nih.gov/pubmed/28588279 http://dx.doi.org/10.1038/s41598-017-02986-5 |
work_keys_str_mv | AT caotengfei atomisticcorrectiveschemeforsupercelldensityfunctionaltheorycalculationsofchargeddefects AT bongiornoangelo atomisticcorrectiveschemeforsupercelldensityfunctionaltheorycalculationsofchargeddefects |