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Transcriptome of barley under three different heavy metal stress reaction
In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460742/ https://www.ncbi.nlm.nih.gov/pubmed/28626638 http://dx.doi.org/10.1016/j.gdata.2017.05.016 |
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author | Kintlová, Martina Blavet, Nicolas Cegan, Radim Hobza, Roman |
author_facet | Kintlová, Martina Blavet, Nicolas Cegan, Radim Hobza, Roman |
author_sort | Kintlová, Martina |
collection | PubMed |
description | In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect for root growth (EC(50)) was determined. We sequenced the total RNA of both roots and shoots from barley with and without heavy metal treatments in three replicates. Raw reads of the transcriptome project have been deposited in NCBI's BioProject accession number PRJNA382490. The obtained transcriptomic data will be useful for further studies focusing on heavy metal tolerance and comparative transcriptome analysis in barley. |
format | Online Article Text |
id | pubmed-5460742 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-54607422017-06-16 Transcriptome of barley under three different heavy metal stress reaction Kintlová, Martina Blavet, Nicolas Cegan, Radim Hobza, Roman Genom Data Data in Brief In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect for root growth (EC(50)) was determined. We sequenced the total RNA of both roots and shoots from barley with and without heavy metal treatments in three replicates. Raw reads of the transcriptome project have been deposited in NCBI's BioProject accession number PRJNA382490. The obtained transcriptomic data will be useful for further studies focusing on heavy metal tolerance and comparative transcriptome analysis in barley. Elsevier 2017-05-22 /pmc/articles/PMC5460742/ /pubmed/28626638 http://dx.doi.org/10.1016/j.gdata.2017.05.016 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Kintlová, Martina Blavet, Nicolas Cegan, Radim Hobza, Roman Transcriptome of barley under three different heavy metal stress reaction |
title | Transcriptome of barley under three different heavy metal stress reaction |
title_full | Transcriptome of barley under three different heavy metal stress reaction |
title_fullStr | Transcriptome of barley under three different heavy metal stress reaction |
title_full_unstemmed | Transcriptome of barley under three different heavy metal stress reaction |
title_short | Transcriptome of barley under three different heavy metal stress reaction |
title_sort | transcriptome of barley under three different heavy metal stress reaction |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460742/ https://www.ncbi.nlm.nih.gov/pubmed/28626638 http://dx.doi.org/10.1016/j.gdata.2017.05.016 |
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