Cargando…

Transcriptome of barley under three different heavy metal stress reaction

In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect...

Descripción completa

Detalles Bibliográficos
Autores principales: Kintlová, Martina, Blavet, Nicolas, Cegan, Radim, Hobza, Roman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460742/
https://www.ncbi.nlm.nih.gov/pubmed/28626638
http://dx.doi.org/10.1016/j.gdata.2017.05.016
_version_ 1783242230743433216
author Kintlová, Martina
Blavet, Nicolas
Cegan, Radim
Hobza, Roman
author_facet Kintlová, Martina
Blavet, Nicolas
Cegan, Radim
Hobza, Roman
author_sort Kintlová, Martina
collection PubMed
description In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect for root growth (EC(50)) was determined. We sequenced the total RNA of both roots and shoots from barley with and without heavy metal treatments in three replicates. Raw reads of the transcriptome project have been deposited in NCBI's BioProject accession number PRJNA382490. The obtained transcriptomic data will be useful for further studies focusing on heavy metal tolerance and comparative transcriptome analysis in barley.
format Online
Article
Text
id pubmed-5460742
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-54607422017-06-16 Transcriptome of barley under three different heavy metal stress reaction Kintlová, Martina Blavet, Nicolas Cegan, Radim Hobza, Roman Genom Data Data in Brief In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect for root growth (EC(50)) was determined. We sequenced the total RNA of both roots and shoots from barley with and without heavy metal treatments in three replicates. Raw reads of the transcriptome project have been deposited in NCBI's BioProject accession number PRJNA382490. The obtained transcriptomic data will be useful for further studies focusing on heavy metal tolerance and comparative transcriptome analysis in barley. Elsevier 2017-05-22 /pmc/articles/PMC5460742/ /pubmed/28626638 http://dx.doi.org/10.1016/j.gdata.2017.05.016 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Kintlová, Martina
Blavet, Nicolas
Cegan, Radim
Hobza, Roman
Transcriptome of barley under three different heavy metal stress reaction
title Transcriptome of barley under three different heavy metal stress reaction
title_full Transcriptome of barley under three different heavy metal stress reaction
title_fullStr Transcriptome of barley under three different heavy metal stress reaction
title_full_unstemmed Transcriptome of barley under three different heavy metal stress reaction
title_short Transcriptome of barley under three different heavy metal stress reaction
title_sort transcriptome of barley under three different heavy metal stress reaction
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460742/
https://www.ncbi.nlm.nih.gov/pubmed/28626638
http://dx.doi.org/10.1016/j.gdata.2017.05.016
work_keys_str_mv AT kintlovamartina transcriptomeofbarleyunderthreedifferentheavymetalstressreaction
AT blavetnicolas transcriptomeofbarleyunderthreedifferentheavymetalstressreaction
AT ceganradim transcriptomeofbarleyunderthreedifferentheavymetalstressreaction
AT hobzaroman transcriptomeofbarleyunderthreedifferentheavymetalstressreaction