haploR: an R package for querying web-based annotation tools

We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discov...

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Detalles Bibliográficos
Autores principales: Zhbannikov, Ilya Y., Arbeev, Konstantin, Ukraintseva, Svetlana, Yashin, Anatoliy I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461892/
https://www.ncbi.nlm.nih.gov/pubmed/28620455
http://dx.doi.org/10.12688/f1000research.10742.2
Descripción
Sumario:We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.

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