haploR: an R package for querying web-based annotation tools

We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discov...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhbannikov, Ilya Y., Arbeev, Konstantin, Ukraintseva, Svetlana, Yashin, Anatoliy I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461892/
https://www.ncbi.nlm.nih.gov/pubmed/28620455
http://dx.doi.org/10.12688/f1000research.10742.2
_version_ 1783242423723360256
author Zhbannikov, Ilya Y.
Arbeev, Konstantin
Ukraintseva, Svetlana
Yashin, Anatoliy I.
author_facet Zhbannikov, Ilya Y.
Arbeev, Konstantin
Ukraintseva, Svetlana
Yashin, Anatoliy I.
author_sort Zhbannikov, Ilya Y.
collection PubMed
description We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
format Online
Article
Text
id pubmed-5461892
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher F1000Research
record_format MEDLINE/PubMed
spelling pubmed-54618922017-06-14 haploR: an R package for querying web-based annotation tools Zhbannikov, Ilya Y. Arbeev, Konstantin Ukraintseva, Svetlana Yashin, Anatoliy I. F1000Res Software Tool Article We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations. F1000Research 2017-05-15 /pmc/articles/PMC5461892/ /pubmed/28620455 http://dx.doi.org/10.12688/f1000research.10742.2 Text en Copyright: © 2017 Zhbannikov IY et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Zhbannikov, Ilya Y.
Arbeev, Konstantin
Ukraintseva, Svetlana
Yashin, Anatoliy I.
haploR: an R package for querying web-based annotation tools
title haploR: an R package for querying web-based annotation tools
title_full haploR: an R package for querying web-based annotation tools
title_fullStr haploR: an R package for querying web-based annotation tools
title_full_unstemmed haploR: an R package for querying web-based annotation tools
title_short haploR: an R package for querying web-based annotation tools
title_sort haplor: an r package for querying web-based annotation tools
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461892/
https://www.ncbi.nlm.nih.gov/pubmed/28620455
http://dx.doi.org/10.12688/f1000research.10742.2
work_keys_str_mv AT zhbannikovilyay haploranrpackageforqueryingwebbasedannotationtools
AT arbeevkonstantin haploranrpackageforqueryingwebbasedannotationtools
AT ukraintsevasvetlana haploranrpackageforqueryingwebbasedannotationtools
AT yashinanatoliyi haploranrpackageforqueryingwebbasedannotationtools

Ejemplares similares