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Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide

[Image: see text] Intrinsically disordered proteins play an important role in biology, and unraveling their labile structure presents a vital challenge. However, the dynamical structure of such proteins thwarts their study by standard techniques such as X-ray diffraction and NMR spectroscopy. Here,...

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Detalles Bibliográficos
Autores principales: Cunha, Ana V., Salamatova, Evgeniia, Bloem, Robbert, Roeters, Steven J., Woutersen, Sander, Pshenichnikov, Maxim S., Jansen, Thomas L. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462486/
https://www.ncbi.nlm.nih.gov/pubmed/28510458
http://dx.doi.org/10.1021/acs.jpclett.7b00731
Descripción
Sumario:[Image: see text] Intrinsically disordered proteins play an important role in biology, and unraveling their labile structure presents a vital challenge. However, the dynamical structure of such proteins thwarts their study by standard techniques such as X-ray diffraction and NMR spectroscopy. Here, we use a neat liquid composed of N-methylacetamide molecules as a model system to elucidate dynamical and structural properties similar to those one can expect to see in intrinsically disordered proteins. To examine the structural dynamics in the neat liquid, we combine molecular dynamics, response-function-based spectral simulations, and two-dimensional polarization-resolved infrared spectroscopy in the amide I (CO stretch) region. The two-dimensional spectra reveal a delicate interplay between hydrogen bonding and intermolecular vibrational coupling effects, observed through a fast anisotropy decay. The present study constitutes a general platform for understanding the structure and dynamics of highly disordered proteins.