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Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide

[Image: see text] Intrinsically disordered proteins play an important role in biology, and unraveling their labile structure presents a vital challenge. However, the dynamical structure of such proteins thwarts their study by standard techniques such as X-ray diffraction and NMR spectroscopy. Here,...

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Autores principales: Cunha, Ana V., Salamatova, Evgeniia, Bloem, Robbert, Roeters, Steven J., Woutersen, Sander, Pshenichnikov, Maxim S., Jansen, Thomas L. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462486/
https://www.ncbi.nlm.nih.gov/pubmed/28510458
http://dx.doi.org/10.1021/acs.jpclett.7b00731
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author Cunha, Ana V.
Salamatova, Evgeniia
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Pshenichnikov, Maxim S.
Jansen, Thomas L. C.
author_facet Cunha, Ana V.
Salamatova, Evgeniia
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Pshenichnikov, Maxim S.
Jansen, Thomas L. C.
author_sort Cunha, Ana V.
collection PubMed
description [Image: see text] Intrinsically disordered proteins play an important role in biology, and unraveling their labile structure presents a vital challenge. However, the dynamical structure of such proteins thwarts their study by standard techniques such as X-ray diffraction and NMR spectroscopy. Here, we use a neat liquid composed of N-methylacetamide molecules as a model system to elucidate dynamical and structural properties similar to those one can expect to see in intrinsically disordered proteins. To examine the structural dynamics in the neat liquid, we combine molecular dynamics, response-function-based spectral simulations, and two-dimensional polarization-resolved infrared spectroscopy in the amide I (CO stretch) region. The two-dimensional spectra reveal a delicate interplay between hydrogen bonding and intermolecular vibrational coupling effects, observed through a fast anisotropy decay. The present study constitutes a general platform for understanding the structure and dynamics of highly disordered proteins.
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spelling pubmed-54624862017-06-08 Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide Cunha, Ana V. Salamatova, Evgeniia Bloem, Robbert Roeters, Steven J. Woutersen, Sander Pshenichnikov, Maxim S. Jansen, Thomas L. C. J Phys Chem Lett [Image: see text] Intrinsically disordered proteins play an important role in biology, and unraveling their labile structure presents a vital challenge. However, the dynamical structure of such proteins thwarts their study by standard techniques such as X-ray diffraction and NMR spectroscopy. Here, we use a neat liquid composed of N-methylacetamide molecules as a model system to elucidate dynamical and structural properties similar to those one can expect to see in intrinsically disordered proteins. To examine the structural dynamics in the neat liquid, we combine molecular dynamics, response-function-based spectral simulations, and two-dimensional polarization-resolved infrared spectroscopy in the amide I (CO stretch) region. The two-dimensional spectra reveal a delicate interplay between hydrogen bonding and intermolecular vibrational coupling effects, observed through a fast anisotropy decay. The present study constitutes a general platform for understanding the structure and dynamics of highly disordered proteins. American Chemical Society 2017-05-16 2017-06-01 /pmc/articles/PMC5462486/ /pubmed/28510458 http://dx.doi.org/10.1021/acs.jpclett.7b00731 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Cunha, Ana V.
Salamatova, Evgeniia
Bloem, Robbert
Roeters, Steven J.
Woutersen, Sander
Pshenichnikov, Maxim S.
Jansen, Thomas L. C.
Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title_full Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title_fullStr Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title_full_unstemmed Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title_short Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide
title_sort interplay between hydrogen bonding and vibrational coupling in liquid n-methylacetamide
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462486/
https://www.ncbi.nlm.nih.gov/pubmed/28510458
http://dx.doi.org/10.1021/acs.jpclett.7b00731
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