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Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, st...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462552/ https://www.ncbi.nlm.nih.gov/pubmed/28615918 http://dx.doi.org/10.1177/1176935117711910 |
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author | Li, Qianyun Yi, Faliu Wang, Tao Xiao, Guanghua Liang, Faming |
author_facet | Li, Qianyun Yi, Faliu Wang, Tao Xiao, Guanghua Liang, Faming |
author_sort | Li, Qianyun |
collection | PubMed |
description | Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, stroma, and tumor cells. Toward this goal, we model the spatial distribution of different types of cells using a modified Potts model for which the parameters represent interactions between different types of cells and estimate the parameters of the Potts model using the double Metropolis-Hastings algorithm. The double Metropolis-Hastings algorithm allows us to simulate samples approximately from a distribution with an intractable normalizing constant. Our numerical results indicate that the spatial interaction between the lymphocyte and tumor cells is significantly associated with the patient’s survival time, and it can be used together with the cell count information to predict the survival of the patients. |
format | Online Article Text |
id | pubmed-5462552 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-54625522017-06-14 Lung Cancer Pathological Image Analysis Using a Hidden Potts Model Li, Qianyun Yi, Faliu Wang, Tao Xiao, Guanghua Liang, Faming Cancer Inform Original Research Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, stroma, and tumor cells. Toward this goal, we model the spatial distribution of different types of cells using a modified Potts model for which the parameters represent interactions between different types of cells and estimate the parameters of the Potts model using the double Metropolis-Hastings algorithm. The double Metropolis-Hastings algorithm allows us to simulate samples approximately from a distribution with an intractable normalizing constant. Our numerical results indicate that the spatial interaction between the lymphocyte and tumor cells is significantly associated with the patient’s survival time, and it can be used together with the cell count information to predict the survival of the patients. SAGE Publications 2017-06-05 /pmc/articles/PMC5462552/ /pubmed/28615918 http://dx.doi.org/10.1177/1176935117711910 Text en © The Author(s) 2017 This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page(https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Li, Qianyun Yi, Faliu Wang, Tao Xiao, Guanghua Liang, Faming Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title | Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title_full | Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title_fullStr | Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title_full_unstemmed | Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title_short | Lung Cancer Pathological Image Analysis Using a Hidden Potts Model |
title_sort | lung cancer pathological image analysis using a hidden potts model |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462552/ https://www.ncbi.nlm.nih.gov/pubmed/28615918 http://dx.doi.org/10.1177/1176935117711910 |
work_keys_str_mv | AT liqianyun lungcancerpathologicalimageanalysisusingahiddenpottsmodel AT yifaliu lungcancerpathologicalimageanalysisusingahiddenpottsmodel AT wangtao lungcancerpathologicalimageanalysisusingahiddenpottsmodel AT xiaoguanghua lungcancerpathologicalimageanalysisusingahiddenpottsmodel AT liangfaming lungcancerpathologicalimageanalysisusingahiddenpottsmodel |