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Lung Cancer Pathological Image Analysis Using a Hidden Potts Model

Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, st...

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Detalles Bibliográficos
Autores principales: Li, Qianyun, Yi, Faliu, Wang, Tao, Xiao, Guanghua, Liang, Faming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462552/
https://www.ncbi.nlm.nih.gov/pubmed/28615918
http://dx.doi.org/10.1177/1176935117711910
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author Li, Qianyun
Yi, Faliu
Wang, Tao
Xiao, Guanghua
Liang, Faming
author_facet Li, Qianyun
Yi, Faliu
Wang, Tao
Xiao, Guanghua
Liang, Faming
author_sort Li, Qianyun
collection PubMed
description Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, stroma, and tumor cells. Toward this goal, we model the spatial distribution of different types of cells using a modified Potts model for which the parameters represent interactions between different types of cells and estimate the parameters of the Potts model using the double Metropolis-Hastings algorithm. The double Metropolis-Hastings algorithm allows us to simulate samples approximately from a distribution with an intractable normalizing constant. Our numerical results indicate that the spatial interaction between the lymphocyte and tumor cells is significantly associated with the patient’s survival time, and it can be used together with the cell count information to predict the survival of the patients.
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spelling pubmed-54625522017-06-14 Lung Cancer Pathological Image Analysis Using a Hidden Potts Model Li, Qianyun Yi, Faliu Wang, Tao Xiao, Guanghua Liang, Faming Cancer Inform Original Research Nowadays, many biological data are acquired via images. In this article, we study the pathological images scanned from 205 patients with lung cancer with the goal to find out the relationship between the survival time and the spatial distribution of different types of cells, including lymphocyte, stroma, and tumor cells. Toward this goal, we model the spatial distribution of different types of cells using a modified Potts model for which the parameters represent interactions between different types of cells and estimate the parameters of the Potts model using the double Metropolis-Hastings algorithm. The double Metropolis-Hastings algorithm allows us to simulate samples approximately from a distribution with an intractable normalizing constant. Our numerical results indicate that the spatial interaction between the lymphocyte and tumor cells is significantly associated with the patient’s survival time, and it can be used together with the cell count information to predict the survival of the patients. SAGE Publications 2017-06-05 /pmc/articles/PMC5462552/ /pubmed/28615918 http://dx.doi.org/10.1177/1176935117711910 Text en © The Author(s) 2017 This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page(https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research
Li, Qianyun
Yi, Faliu
Wang, Tao
Xiao, Guanghua
Liang, Faming
Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title_full Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title_fullStr Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title_full_unstemmed Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title_short Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
title_sort lung cancer pathological image analysis using a hidden potts model
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462552/
https://www.ncbi.nlm.nih.gov/pubmed/28615918
http://dx.doi.org/10.1177/1176935117711910
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