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Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate
[Image: see text] Oxalate:ferredoxin oxidoreductase (OOR) is an unusual member of the thiamine pyrophosphate (TPP)-dependent 2-oxoacid:ferredoxin oxidoreductase (OFOR) family in that it catalyzes the coenzyme A (CoA)-independent conversion of oxalate into 2 equivalents of carbon dioxide. This reacti...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5463272/ https://www.ncbi.nlm.nih.gov/pubmed/28514140 http://dx.doi.org/10.1021/acs.biochem.7b00222 |
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author | Pierce, Elizabeth Mansoorabadi, Steven O. Can, Mehmet Reed, George H. Ragsdale, Stephen W. |
author_facet | Pierce, Elizabeth Mansoorabadi, Steven O. Can, Mehmet Reed, George H. Ragsdale, Stephen W. |
author_sort | Pierce, Elizabeth |
collection | PubMed |
description | [Image: see text] Oxalate:ferredoxin oxidoreductase (OOR) is an unusual member of the thiamine pyrophosphate (TPP)-dependent 2-oxoacid:ferredoxin oxidoreductase (OFOR) family in that it catalyzes the coenzyme A (CoA)-independent conversion of oxalate into 2 equivalents of carbon dioxide. This reaction is surprising because binding of CoA to the acyl-TPP intermediate of other OFORs results in formation of a CoA ester, and in the case of pyruvate:ferredoxin oxidoreductase (PFOR), CoA binding generates the central metabolic intermediate acetyl-CoA and promotes a 10(5)-fold acceleration of the rate of electron transfer. Here we describe kinetic, spectroscopic, and computational results to show that CoA has no effect on catalysis by OOR and describe the chemical rationale for why this cofactor is unnecessary in this enzymatic transformation. Our results demonstrate that, like PFOR, OOR binds pyruvate and catalyzes decarboxylation to form the same hydroxyethylidine–TPP (HE–TPP) intermediate and one-electron transfer to generate the HE–TPP radical. However, in OOR, this intermediate remains stranded at the active site as a covalent inhibitor. These and other results indicate that, like other OFOR family members, OOR generates an oxalate-derived adduct with TPP (oxalyl-TPP) that undergoes decarboxylation and one-electron transfer to form a radical intermediate remaining bound to TPP (dihydroxymethylidene–TPP). However, unlike in PFOR, where CoA binding drives formation of the product, in OOR, proton transfer and a conformational change in the “switch loop” alter the redox potential of the radical intermediate sufficiently to promote the transfer of an electron into the iron–sulfur cluster network, leading directly to a second decarboxylation and completing the catalytic cycle. |
format | Online Article Text |
id | pubmed-5463272 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-54632722017-06-12 Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate Pierce, Elizabeth Mansoorabadi, Steven O. Can, Mehmet Reed, George H. Ragsdale, Stephen W. Biochemistry [Image: see text] Oxalate:ferredoxin oxidoreductase (OOR) is an unusual member of the thiamine pyrophosphate (TPP)-dependent 2-oxoacid:ferredoxin oxidoreductase (OFOR) family in that it catalyzes the coenzyme A (CoA)-independent conversion of oxalate into 2 equivalents of carbon dioxide. This reaction is surprising because binding of CoA to the acyl-TPP intermediate of other OFORs results in formation of a CoA ester, and in the case of pyruvate:ferredoxin oxidoreductase (PFOR), CoA binding generates the central metabolic intermediate acetyl-CoA and promotes a 10(5)-fold acceleration of the rate of electron transfer. Here we describe kinetic, spectroscopic, and computational results to show that CoA has no effect on catalysis by OOR and describe the chemical rationale for why this cofactor is unnecessary in this enzymatic transformation. Our results demonstrate that, like PFOR, OOR binds pyruvate and catalyzes decarboxylation to form the same hydroxyethylidine–TPP (HE–TPP) intermediate and one-electron transfer to generate the HE–TPP radical. However, in OOR, this intermediate remains stranded at the active site as a covalent inhibitor. These and other results indicate that, like other OFOR family members, OOR generates an oxalate-derived adduct with TPP (oxalyl-TPP) that undergoes decarboxylation and one-electron transfer to form a radical intermediate remaining bound to TPP (dihydroxymethylidene–TPP). However, unlike in PFOR, where CoA binding drives formation of the product, in OOR, proton transfer and a conformational change in the “switch loop” alter the redox potential of the radical intermediate sufficiently to promote the transfer of an electron into the iron–sulfur cluster network, leading directly to a second decarboxylation and completing the catalytic cycle. American Chemical Society 2017-05-17 2017-06-06 /pmc/articles/PMC5463272/ /pubmed/28514140 http://dx.doi.org/10.1021/acs.biochem.7b00222 Text en Copyright © 2017 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Pierce, Elizabeth Mansoorabadi, Steven O. Can, Mehmet Reed, George H. Ragsdale, Stephen W. Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title | Properties of Intermediates in the Catalytic Cycle
of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title_full | Properties of Intermediates in the Catalytic Cycle
of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title_fullStr | Properties of Intermediates in the Catalytic Cycle
of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title_full_unstemmed | Properties of Intermediates in the Catalytic Cycle
of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title_short | Properties of Intermediates in the Catalytic Cycle
of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate |
title_sort | properties of intermediates in the catalytic cycle
of oxalate oxidoreductase and its suicide inactivation by pyruvate |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5463272/ https://www.ncbi.nlm.nih.gov/pubmed/28514140 http://dx.doi.org/10.1021/acs.biochem.7b00222 |
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