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Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences

The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gainin...

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Autores principales: Bucksch, Alexander, Atta-Boateng, Acheampong, Azihou, Akomian F., Battogtokh, Dorjsuren, Baumgartner, Aly, Binder, Brad M., Braybrook, Siobhan A., Chang, Cynthia, Coneva, Viktoirya, DeWitt, Thomas J., Fletcher, Alexander G., Gehan, Malia A., Diaz-Martinez, Diego Hernan, Hong, Lilan, Iyer-Pascuzzi, Anjali S., Klein, Laura L., Leiboff, Samuel, Li, Mao, Lynch, Jonathan P., Maizel, Alexis, Maloof, Julin N., Markelz, R. J. Cody, Martinez, Ciera C., Miller, Laura A., Mio, Washington, Palubicki, Wojtek, Poorter, Hendrik, Pradal, Christophe, Price, Charles A., Puttonen, Eetu, Reese, John B., Rellán-Álvarez, Rubén, Spalding, Edgar P., Sparks, Erin E., Topp, Christopher N., Williams, Joseph H., Chitwood, Daniel H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465304/
https://www.ncbi.nlm.nih.gov/pubmed/28659934
http://dx.doi.org/10.3389/fpls.2017.00900
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author Bucksch, Alexander
Atta-Boateng, Acheampong
Azihou, Akomian F.
Battogtokh, Dorjsuren
Baumgartner, Aly
Binder, Brad M.
Braybrook, Siobhan A.
Chang, Cynthia
Coneva, Viktoirya
DeWitt, Thomas J.
Fletcher, Alexander G.
Gehan, Malia A.
Diaz-Martinez, Diego Hernan
Hong, Lilan
Iyer-Pascuzzi, Anjali S.
Klein, Laura L.
Leiboff, Samuel
Li, Mao
Lynch, Jonathan P.
Maizel, Alexis
Maloof, Julin N.
Markelz, R. J. Cody
Martinez, Ciera C.
Miller, Laura A.
Mio, Washington
Palubicki, Wojtek
Poorter, Hendrik
Pradal, Christophe
Price, Charles A.
Puttonen, Eetu
Reese, John B.
Rellán-Álvarez, Rubén
Spalding, Edgar P.
Sparks, Erin E.
Topp, Christopher N.
Williams, Joseph H.
Chitwood, Daniel H.
author_facet Bucksch, Alexander
Atta-Boateng, Acheampong
Azihou, Akomian F.
Battogtokh, Dorjsuren
Baumgartner, Aly
Binder, Brad M.
Braybrook, Siobhan A.
Chang, Cynthia
Coneva, Viktoirya
DeWitt, Thomas J.
Fletcher, Alexander G.
Gehan, Malia A.
Diaz-Martinez, Diego Hernan
Hong, Lilan
Iyer-Pascuzzi, Anjali S.
Klein, Laura L.
Leiboff, Samuel
Li, Mao
Lynch, Jonathan P.
Maizel, Alexis
Maloof, Julin N.
Markelz, R. J. Cody
Martinez, Ciera C.
Miller, Laura A.
Mio, Washington
Palubicki, Wojtek
Poorter, Hendrik
Pradal, Christophe
Price, Charles A.
Puttonen, Eetu
Reese, John B.
Rellán-Álvarez, Rubén
Spalding, Edgar P.
Sparks, Erin E.
Topp, Christopher N.
Williams, Joseph H.
Chitwood, Daniel H.
author_sort Bucksch, Alexander
collection PubMed
description The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gaining an understanding of how to modify plant morphology, through molecular biology and breeding, aided by a mathematical perspective, is critical to improving agriculture, and the monitoring of ecosystems is vital to modeling a future with fewer natural resources. In this white paper, we begin with an overview in quantifying the form of plants and mathematical models of patterning in plants. We then explore the fundamental challenges that remain unanswered concerning plant morphology, from the barriers preventing the prediction of phenotype from genotype to modeling the movement of leaves in air streams. We end with a discussion concerning the education of plant morphology synthesizing biological and mathematical approaches and ways to facilitate research advances through outreach, cross-disciplinary training, and open science. Unleashing the potential of geometric and topological approaches in the plant sciences promises to transform our understanding of both plants and mathematics.
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spelling pubmed-54653042017-06-28 Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences Bucksch, Alexander Atta-Boateng, Acheampong Azihou, Akomian F. Battogtokh, Dorjsuren Baumgartner, Aly Binder, Brad M. Braybrook, Siobhan A. Chang, Cynthia Coneva, Viktoirya DeWitt, Thomas J. Fletcher, Alexander G. Gehan, Malia A. Diaz-Martinez, Diego Hernan Hong, Lilan Iyer-Pascuzzi, Anjali S. Klein, Laura L. Leiboff, Samuel Li, Mao Lynch, Jonathan P. Maizel, Alexis Maloof, Julin N. Markelz, R. J. Cody Martinez, Ciera C. Miller, Laura A. Mio, Washington Palubicki, Wojtek Poorter, Hendrik Pradal, Christophe Price, Charles A. Puttonen, Eetu Reese, John B. Rellán-Álvarez, Rubén Spalding, Edgar P. Sparks, Erin E. Topp, Christopher N. Williams, Joseph H. Chitwood, Daniel H. Front Plant Sci Plant Science The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gaining an understanding of how to modify plant morphology, through molecular biology and breeding, aided by a mathematical perspective, is critical to improving agriculture, and the monitoring of ecosystems is vital to modeling a future with fewer natural resources. In this white paper, we begin with an overview in quantifying the form of plants and mathematical models of patterning in plants. We then explore the fundamental challenges that remain unanswered concerning plant morphology, from the barriers preventing the prediction of phenotype from genotype to modeling the movement of leaves in air streams. We end with a discussion concerning the education of plant morphology synthesizing biological and mathematical approaches and ways to facilitate research advances through outreach, cross-disciplinary training, and open science. Unleashing the potential of geometric and topological approaches in the plant sciences promises to transform our understanding of both plants and mathematics. Frontiers Media S.A. 2017-06-09 /pmc/articles/PMC5465304/ /pubmed/28659934 http://dx.doi.org/10.3389/fpls.2017.00900 Text en Copyright © 2017 Bucksch, Atta-Boateng, Azihou, Battogtokh, Baumgartner, Binder, Braybrook, Chang, Coneva, DeWitt, Fletcher, Gehan, Diaz-Martinez, Hong, Iyer-Pascuzzi, Klein, Leiboff, Li, Lynch, Maizel, Maloof, Markelz, Martinez, Miller, Mio, Palubicki, Poorter, Pradal, Price, Puttonen, Reese, Rellán-Álvarez, Spalding, Sparks, Topp, Williams and Chitwood. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Bucksch, Alexander
Atta-Boateng, Acheampong
Azihou, Akomian F.
Battogtokh, Dorjsuren
Baumgartner, Aly
Binder, Brad M.
Braybrook, Siobhan A.
Chang, Cynthia
Coneva, Viktoirya
DeWitt, Thomas J.
Fletcher, Alexander G.
Gehan, Malia A.
Diaz-Martinez, Diego Hernan
Hong, Lilan
Iyer-Pascuzzi, Anjali S.
Klein, Laura L.
Leiboff, Samuel
Li, Mao
Lynch, Jonathan P.
Maizel, Alexis
Maloof, Julin N.
Markelz, R. J. Cody
Martinez, Ciera C.
Miller, Laura A.
Mio, Washington
Palubicki, Wojtek
Poorter, Hendrik
Pradal, Christophe
Price, Charles A.
Puttonen, Eetu
Reese, John B.
Rellán-Álvarez, Rubén
Spalding, Edgar P.
Sparks, Erin E.
Topp, Christopher N.
Williams, Joseph H.
Chitwood, Daniel H.
Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title_full Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title_fullStr Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title_full_unstemmed Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title_short Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
title_sort morphological plant modeling: unleashing geometric and topological potential within the plant sciences
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465304/
https://www.ncbi.nlm.nih.gov/pubmed/28659934
http://dx.doi.org/10.3389/fpls.2017.00900
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