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Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gainin...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465304/ https://www.ncbi.nlm.nih.gov/pubmed/28659934 http://dx.doi.org/10.3389/fpls.2017.00900 |
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author | Bucksch, Alexander Atta-Boateng, Acheampong Azihou, Akomian F. Battogtokh, Dorjsuren Baumgartner, Aly Binder, Brad M. Braybrook, Siobhan A. Chang, Cynthia Coneva, Viktoirya DeWitt, Thomas J. Fletcher, Alexander G. Gehan, Malia A. Diaz-Martinez, Diego Hernan Hong, Lilan Iyer-Pascuzzi, Anjali S. Klein, Laura L. Leiboff, Samuel Li, Mao Lynch, Jonathan P. Maizel, Alexis Maloof, Julin N. Markelz, R. J. Cody Martinez, Ciera C. Miller, Laura A. Mio, Washington Palubicki, Wojtek Poorter, Hendrik Pradal, Christophe Price, Charles A. Puttonen, Eetu Reese, John B. Rellán-Álvarez, Rubén Spalding, Edgar P. Sparks, Erin E. Topp, Christopher N. Williams, Joseph H. Chitwood, Daniel H. |
author_facet | Bucksch, Alexander Atta-Boateng, Acheampong Azihou, Akomian F. Battogtokh, Dorjsuren Baumgartner, Aly Binder, Brad M. Braybrook, Siobhan A. Chang, Cynthia Coneva, Viktoirya DeWitt, Thomas J. Fletcher, Alexander G. Gehan, Malia A. Diaz-Martinez, Diego Hernan Hong, Lilan Iyer-Pascuzzi, Anjali S. Klein, Laura L. Leiboff, Samuel Li, Mao Lynch, Jonathan P. Maizel, Alexis Maloof, Julin N. Markelz, R. J. Cody Martinez, Ciera C. Miller, Laura A. Mio, Washington Palubicki, Wojtek Poorter, Hendrik Pradal, Christophe Price, Charles A. Puttonen, Eetu Reese, John B. Rellán-Álvarez, Rubén Spalding, Edgar P. Sparks, Erin E. Topp, Christopher N. Williams, Joseph H. Chitwood, Daniel H. |
author_sort | Bucksch, Alexander |
collection | PubMed |
description | The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gaining an understanding of how to modify plant morphology, through molecular biology and breeding, aided by a mathematical perspective, is critical to improving agriculture, and the monitoring of ecosystems is vital to modeling a future with fewer natural resources. In this white paper, we begin with an overview in quantifying the form of plants and mathematical models of patterning in plants. We then explore the fundamental challenges that remain unanswered concerning plant morphology, from the barriers preventing the prediction of phenotype from genotype to modeling the movement of leaves in air streams. We end with a discussion concerning the education of plant morphology synthesizing biological and mathematical approaches and ways to facilitate research advances through outreach, cross-disciplinary training, and open science. Unleashing the potential of geometric and topological approaches in the plant sciences promises to transform our understanding of both plants and mathematics. |
format | Online Article Text |
id | pubmed-5465304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54653042017-06-28 Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences Bucksch, Alexander Atta-Boateng, Acheampong Azihou, Akomian F. Battogtokh, Dorjsuren Baumgartner, Aly Binder, Brad M. Braybrook, Siobhan A. Chang, Cynthia Coneva, Viktoirya DeWitt, Thomas J. Fletcher, Alexander G. Gehan, Malia A. Diaz-Martinez, Diego Hernan Hong, Lilan Iyer-Pascuzzi, Anjali S. Klein, Laura L. Leiboff, Samuel Li, Mao Lynch, Jonathan P. Maizel, Alexis Maloof, Julin N. Markelz, R. J. Cody Martinez, Ciera C. Miller, Laura A. Mio, Washington Palubicki, Wojtek Poorter, Hendrik Pradal, Christophe Price, Charles A. Puttonen, Eetu Reese, John B. Rellán-Álvarez, Rubén Spalding, Edgar P. Sparks, Erin E. Topp, Christopher N. Williams, Joseph H. Chitwood, Daniel H. Front Plant Sci Plant Science The geometries and topologies of leaves, flowers, roots, shoots, and their arrangements have fascinated plant biologists and mathematicians alike. As such, plant morphology is inherently mathematical in that it describes plant form and architecture with geometrical and topological techniques. Gaining an understanding of how to modify plant morphology, through molecular biology and breeding, aided by a mathematical perspective, is critical to improving agriculture, and the monitoring of ecosystems is vital to modeling a future with fewer natural resources. In this white paper, we begin with an overview in quantifying the form of plants and mathematical models of patterning in plants. We then explore the fundamental challenges that remain unanswered concerning plant morphology, from the barriers preventing the prediction of phenotype from genotype to modeling the movement of leaves in air streams. We end with a discussion concerning the education of plant morphology synthesizing biological and mathematical approaches and ways to facilitate research advances through outreach, cross-disciplinary training, and open science. Unleashing the potential of geometric and topological approaches in the plant sciences promises to transform our understanding of both plants and mathematics. Frontiers Media S.A. 2017-06-09 /pmc/articles/PMC5465304/ /pubmed/28659934 http://dx.doi.org/10.3389/fpls.2017.00900 Text en Copyright © 2017 Bucksch, Atta-Boateng, Azihou, Battogtokh, Baumgartner, Binder, Braybrook, Chang, Coneva, DeWitt, Fletcher, Gehan, Diaz-Martinez, Hong, Iyer-Pascuzzi, Klein, Leiboff, Li, Lynch, Maizel, Maloof, Markelz, Martinez, Miller, Mio, Palubicki, Poorter, Pradal, Price, Puttonen, Reese, Rellán-Álvarez, Spalding, Sparks, Topp, Williams and Chitwood. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Bucksch, Alexander Atta-Boateng, Acheampong Azihou, Akomian F. Battogtokh, Dorjsuren Baumgartner, Aly Binder, Brad M. Braybrook, Siobhan A. Chang, Cynthia Coneva, Viktoirya DeWitt, Thomas J. Fletcher, Alexander G. Gehan, Malia A. Diaz-Martinez, Diego Hernan Hong, Lilan Iyer-Pascuzzi, Anjali S. Klein, Laura L. Leiboff, Samuel Li, Mao Lynch, Jonathan P. Maizel, Alexis Maloof, Julin N. Markelz, R. J. Cody Martinez, Ciera C. Miller, Laura A. Mio, Washington Palubicki, Wojtek Poorter, Hendrik Pradal, Christophe Price, Charles A. Puttonen, Eetu Reese, John B. Rellán-Álvarez, Rubén Spalding, Edgar P. Sparks, Erin E. Topp, Christopher N. Williams, Joseph H. Chitwood, Daniel H. Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title | Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title_full | Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title_fullStr | Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title_full_unstemmed | Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title_short | Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences |
title_sort | morphological plant modeling: unleashing geometric and topological potential within the plant sciences |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465304/ https://www.ncbi.nlm.nih.gov/pubmed/28659934 http://dx.doi.org/10.3389/fpls.2017.00900 |
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