Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States

This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic un...

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Detalles Bibliográficos
Autores principales: Li, Zhen, Wang, Leyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2017
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/
https://www.ncbi.nlm.nih.gov/pubmed/28596398
http://dx.doi.org/10.1128/genomeA.00468-17
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author Li, Zhen
Wang, Leyi
author_facet Li, Zhen
Wang, Leyi
author_sort Li, Zhen
collection PubMed
description This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples.
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spelling pubmed-54656172017-06-15 Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States Li, Zhen Wang, Leyi Genome Announc Prokaryotes This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae, Proteobacteria, and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples. American Society for Microbiology 2017-06-08 /pmc/articles/PMC5465617/ /pubmed/28596398 http://dx.doi.org/10.1128/genomeA.00468-17 Text en Copyright © 2017 Li and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle Prokaryotes
Li, Zhen
Wang, Leyi
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_full Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_fullStr Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_full_unstemmed Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_short Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster (Crassostrea gigas) Microbiota from the Puget Sound Region in the United States
title_sort metagenomic 16s rrna sequencing analysis of pacific oyster (crassostrea gigas) microbiota from the puget sound region in the united states
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5465617/
https://www.ncbi.nlm.nih.gov/pubmed/28596398
http://dx.doi.org/10.1128/genomeA.00468-17
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AT wangleyi metagenomic16srrnasequencinganalysisofpacificoystercrassostreagigasmicrobiotafromthepugetsoundregionintheunitedstates

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