Cargando…

Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens

High-density single nucleotide polymorphism (SNP) markers are crucial to improve the resolution and accuracy of genome-wide association study (GWAS) and genomic selection (GS). Numerous approaches, including whole genome sequencing, genome sampling sequencing, and SNP chips are able to discover or g...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Yuzhe, Cao, Xuemin, Zhao, Yiqiang, Fei, Jing, Hu, Xiaoxiang, Li, Ning
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466311/ https://www.ncbi.nlm.nih.gov/pubmed/28598985 http://dx.doi.org/10.1371/journal.pone.0179073

Ejemplares similares

Genome-wide association study identifies SNPs for growth performance and serum indicators in Valgus-varus deformity broilers (Gallus gallus) using ddGBS sequencing
por: Guo, Yaping, et al.
Publicado: (2022)

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping
por: Sonah, Humira, et al.
Publicado: (2013)

Development of a high density 600K SNP genotyping array for chicken
por: Kranis, Andreas, et al.
Publicado: (2013)

Expanded functionality, increased accuracy, and enhanced speed in the de novo genotyping-by-sequencing pipeline GBS-SNP-CROP
por: Melo, Arthur T O, et al.
Publicado: (2019)

Expanded functionality, increased accuracy, and enhanced speed in the de novo genotyping-by-sequencing pipeline GBS-SNP-CROP
por: Melo, Arthur T O, et al.
Publicado: (2019)

Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation
por: Brouard, Jean-Simon, et al.
Publicado: (2017)

A bumper crop of SNPs in soybean through high‐density genotyping‐by‐sequencing (HD‐GBS)
por: Torkamaneh, Davoud, et al.
Publicado: (2021)

Design of low density SNP chips for genotype imputation in layer chicken
por: Herry, Florian, et al.
Publicado: (2018)

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
por: Glaubitz, Jeffrey C., et al.
Publicado: (2014)

High-Throughput SNP Genotyping
por: Jenkins, Suzanne, et al.
Publicado: (2002)

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels
por: Gualdrón Duarte, Jose L, et al.
Publicado: (2013)

Construction of a SNP-Based High-Density Genetic Map Using Genotyping by Sequencing (GBS) and QTL Analysis of Nut Traits in Chinese Chestnut (Castanea mollissima Blume)
por: Ji, Feiyang, et al.
Publicado: (2018)

tGBS(®) genotyping-by-sequencing enables reliable genotyping of heterozygous loci
por: Ott, Alina, et al.
Publicado: (2017)

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
por: Elshire, Robert J., et al.
Publicado: (2011)

Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping
por: Olshen, Adam B, et al.
Publicado: (2008)

Development and Characterization of a High Density SNP Genotyping Assay for Cattle
por: Matukumalli, Lakshmi K., et al.
Publicado: (2009)

SNP Discovery and Development of a High-Density Genotyping Array for Sunflower
por: Bachlava, Eleni, et al.
Publicado: (2012)

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references
por: Alipour, Hadi, et al.
Publicado: (2019)

Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
por: Perea, Claudia, et al.
Publicado: (2016)

Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding
por: Wang, Nan, et al.
Publicado: (2020)

Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS)
por: Pootakham, Wirulda, et al.
Publicado: (2015)

High-Density Linkage Mapping of Agronomic Trait QTLs in Wheat under Water Deficit Condition using Genotyping by Sequencing (GBS)
por: Abdollahi Sisi, Nayyer, et al.
Publicado: (2022)

Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra
por: Rogier, Odile, et al.
Publicado: (2018)

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants
por: Yang, Guo-Qian, et al.
Publicado: (2016)

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)
por: Verma, Subodh, et al.
Publicado: (2015)

High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS)
por: Diouf, Latyr, et al.
Publicado: (2017)

Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Psc) in hulless barley
por: Yao, Xiaohua, et al.
Publicado: (2018)

High Density Linkage Map Construction and Mapping of Yield Trait QTLs in Maize (Zea mays) Using the Genotyping-by-Sequencing (GBS) Technology
por: Su, Chengfu, et al.
Publicado: (2017)

Application of Homozygosity Haplotype Analysis to Genetic Mapping with High-Density SNP Genotype Data
por: Jiang, Haiyan, et al.
Publicado: (2009)

Estimating autozygosity from high-throughput information: effects of SNP density and genotyping errors
por: Ferenčaković, Maja, et al.
Publicado: (2013)

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes
por: Porto-Neto, Laercio R, et al.
Publicado: (2014)

Assessment of autozygosity in Nellore cows (Bos indicus) through high-density SNP genotypes
por: Zavarez, Ludmilla B., et al.
Publicado: (2015)

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
por: Porto-Neto, Laercio R, et al.
Publicado: (2013)

Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies
por: Torkamaneh, Davoud, et al.
Publicado: (2016)

Using Genotyping-By-Sequencing (GBS) for Genomic Discovery in Cultivated Oat
por: Huang, Yung-Fen, et al.
Publicado: (2014)

Diversity in Grain Amaranths and Relatives Distinguished by Genotyping by Sequencing (GBS)
por: Wu, Xingbo, et al.
Publicado: (2017)

Genetic Diversity Assessed by Genotyping by Sequencing (GBS) in Watermelon Germplasm
por: Lee, Kyung Jun, et al.
Publicado: (2019)

GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data
por: Melo, Arthur T. O., et al.
Publicado: (2016)

A new chicken 55K SNP genotyping array
por: Liu, Ranran, et al.
Publicado: (2019)

Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS)
por: Guajardo, Verónica, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_cv70p1ngmnn50la839t380jbg0