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Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis
Diverticular disease is characterized by pouches (that is, diverticulae) due to weakness in the bowel wall, which can become infected and inflamed causing diverticulitis, with potentially severe complications. Here, we test 32.4 million sequence variants identified through whole-genome sequencing (W...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467205/ https://www.ncbi.nlm.nih.gov/pubmed/28585551 http://dx.doi.org/10.1038/ncomms15789 |
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author | Sigurdsson, Snaevar Alexandersson, Kristjan F. Sulem, Patrick Feenstra, Bjarke Gudmundsdottir, Steinunn Halldorsson, Gisli H. Olafsson, Sigurgeir Sigurdsson, Asgeir Rafnar, Thorunn Thorgeirsson, Thorgeir Sørensen, Erik Nordholm-Carstensen, Andreas Burcharth, Jakob Andersen, Jens Jørgensen, Henrik Stig Possfelt-Møller, Emma Ullum, Henrik Thorleifsson, Gudmar Masson, Gisli Thorsteinsdottir, Unnur Melbye, Mads Gudbjartsson, Daniel F. Stefansson, Tryggvi Jonsdottir, Ingileif Stefansson, Kari |
author_facet | Sigurdsson, Snaevar Alexandersson, Kristjan F. Sulem, Patrick Feenstra, Bjarke Gudmundsdottir, Steinunn Halldorsson, Gisli H. Olafsson, Sigurgeir Sigurdsson, Asgeir Rafnar, Thorunn Thorgeirsson, Thorgeir Sørensen, Erik Nordholm-Carstensen, Andreas Burcharth, Jakob Andersen, Jens Jørgensen, Henrik Stig Possfelt-Møller, Emma Ullum, Henrik Thorleifsson, Gudmar Masson, Gisli Thorsteinsdottir, Unnur Melbye, Mads Gudbjartsson, Daniel F. Stefansson, Tryggvi Jonsdottir, Ingileif Stefansson, Kari |
author_sort | Sigurdsson, Snaevar |
collection | PubMed |
description | Diverticular disease is characterized by pouches (that is, diverticulae) due to weakness in the bowel wall, which can become infected and inflamed causing diverticulitis, with potentially severe complications. Here, we test 32.4 million sequence variants identified through whole-genome sequencing (WGS) of 15,220 Icelanders for association with diverticular disease (5,426 cases) and its more severe form diverticulitis (2,764 cases). Subsequently, 16 sequence variants are followed up in a diverticular disease sample from Denmark (5,970 cases, 3,020 controls). In the combined Icelandic and Danish data sets we observe significant association of intronic variants in ARHGAP15 (Rho GTPase-activating protein 15; rs4662344-T: P=1.9 × 10(−18), odds ratio (OR)=1.23) and COLQ (collagen-like tail subunit of asymmetric acetylcholinesterase; rs7609897-T: P=1.5 × 10(−10), OR=0.87) with diverticular disease and in FAM155A (family with sequence similarity 155A; rs67153654-A: P=3.0 × 10(−11), OR=0.82) with diverticulitis. These are the first loci shown to associate with diverticular disease in a genome-wide study. |
format | Online Article Text |
id | pubmed-5467205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-54672052017-06-19 Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis Sigurdsson, Snaevar Alexandersson, Kristjan F. Sulem, Patrick Feenstra, Bjarke Gudmundsdottir, Steinunn Halldorsson, Gisli H. Olafsson, Sigurgeir Sigurdsson, Asgeir Rafnar, Thorunn Thorgeirsson, Thorgeir Sørensen, Erik Nordholm-Carstensen, Andreas Burcharth, Jakob Andersen, Jens Jørgensen, Henrik Stig Possfelt-Møller, Emma Ullum, Henrik Thorleifsson, Gudmar Masson, Gisli Thorsteinsdottir, Unnur Melbye, Mads Gudbjartsson, Daniel F. Stefansson, Tryggvi Jonsdottir, Ingileif Stefansson, Kari Nat Commun Article Diverticular disease is characterized by pouches (that is, diverticulae) due to weakness in the bowel wall, which can become infected and inflamed causing diverticulitis, with potentially severe complications. Here, we test 32.4 million sequence variants identified through whole-genome sequencing (WGS) of 15,220 Icelanders for association with diverticular disease (5,426 cases) and its more severe form diverticulitis (2,764 cases). Subsequently, 16 sequence variants are followed up in a diverticular disease sample from Denmark (5,970 cases, 3,020 controls). In the combined Icelandic and Danish data sets we observe significant association of intronic variants in ARHGAP15 (Rho GTPase-activating protein 15; rs4662344-T: P=1.9 × 10(−18), odds ratio (OR)=1.23) and COLQ (collagen-like tail subunit of asymmetric acetylcholinesterase; rs7609897-T: P=1.5 × 10(−10), OR=0.87) with diverticular disease and in FAM155A (family with sequence similarity 155A; rs67153654-A: P=3.0 × 10(−11), OR=0.82) with diverticulitis. These are the first loci shown to associate with diverticular disease in a genome-wide study. Nature Publishing Group 2017-06-06 /pmc/articles/PMC5467205/ /pubmed/28585551 http://dx.doi.org/10.1038/ncomms15789 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Sigurdsson, Snaevar Alexandersson, Kristjan F. Sulem, Patrick Feenstra, Bjarke Gudmundsdottir, Steinunn Halldorsson, Gisli H. Olafsson, Sigurgeir Sigurdsson, Asgeir Rafnar, Thorunn Thorgeirsson, Thorgeir Sørensen, Erik Nordholm-Carstensen, Andreas Burcharth, Jakob Andersen, Jens Jørgensen, Henrik Stig Possfelt-Møller, Emma Ullum, Henrik Thorleifsson, Gudmar Masson, Gisli Thorsteinsdottir, Unnur Melbye, Mads Gudbjartsson, Daniel F. Stefansson, Tryggvi Jonsdottir, Ingileif Stefansson, Kari Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title | Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title_full | Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title_fullStr | Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title_full_unstemmed | Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title_short | Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis |
title_sort | sequence variants in arhgap15, colq and fam155a associate with diverticular disease and diverticulitis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467205/ https://www.ncbi.nlm.nih.gov/pubmed/28585551 http://dx.doi.org/10.1038/ncomms15789 |
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