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BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases

BioM2MetDisease is a manually curated database that aims to provide a comprehensive and experimentally supported resource of associations between metabolic diseases and various biomolecules. Recently, metabolic diseases such as diabetes have become one of the leading threats to people’s health. Meta...

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Autores principales: Xu, Yanjun, Yang, Haixiu, Wu, Tan, Dong, Qun, Sun, Zeguo, Shang, Desi, Li, Feng, Xu, Yingqi, Su, Fei, Liu, Siyao, Zhang, Yunpeng, Li, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467570/
https://www.ncbi.nlm.nih.gov/pubmed/28605773
http://dx.doi.org/10.1093/database/bax037
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author Xu, Yanjun
Yang, Haixiu
Wu, Tan
Dong, Qun
Sun, Zeguo
Shang, Desi
Li, Feng
Xu, Yingqi
Su, Fei
Liu, Siyao
Zhang, Yunpeng
Li, Xia
author_facet Xu, Yanjun
Yang, Haixiu
Wu, Tan
Dong, Qun
Sun, Zeguo
Shang, Desi
Li, Feng
Xu, Yingqi
Su, Fei
Liu, Siyao
Zhang, Yunpeng
Li, Xia
author_sort Xu, Yanjun
collection PubMed
description BioM2MetDisease is a manually curated database that aims to provide a comprehensive and experimentally supported resource of associations between metabolic diseases and various biomolecules. Recently, metabolic diseases such as diabetes have become one of the leading threats to people’s health. Metabolic disease associated with alterations of multiple types of biomolecules such as miRNAs and metabolites. An integrated and high-quality data source that collection of metabolic disease associated biomolecules is essential for exploring the underlying molecular mechanisms and discovering novel therapeutics. Here, we developed the BioM2MetDisease database, which currently documents 2681 entries of relationships between 1147 biomolecules (miRNAs, metabolites and small molecules/drugs) and 78 metabolic diseases across 14 species. Each entry includes biomolecule category, species, biomolecule name, disease name, dysregulation pattern, experimental technique, a brief description of metabolic disease-biomolecule relationships, the reference, additional annotation information etc. BioM2MetDisease provides a user-friendly interface to explore and retrieve all data conveniently. A submission page was also offered for researchers to submit new associations between biomolecules and metabolic diseases. BioM2MetDisease provides a comprehensive resource for studying biology molecules act in metabolic diseases, and it is helpful for understanding the molecular mechanisms and developing novel therapeutics for metabolic diseases. Database URL: http://www.bio-bigdata.com/BioM2MetDisease/
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spelling pubmed-54675702017-06-19 BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases Xu, Yanjun Yang, Haixiu Wu, Tan Dong, Qun Sun, Zeguo Shang, Desi Li, Feng Xu, Yingqi Su, Fei Liu, Siyao Zhang, Yunpeng Li, Xia Database (Oxford) Original Article BioM2MetDisease is a manually curated database that aims to provide a comprehensive and experimentally supported resource of associations between metabolic diseases and various biomolecules. Recently, metabolic diseases such as diabetes have become one of the leading threats to people’s health. Metabolic disease associated with alterations of multiple types of biomolecules such as miRNAs and metabolites. An integrated and high-quality data source that collection of metabolic disease associated biomolecules is essential for exploring the underlying molecular mechanisms and discovering novel therapeutics. Here, we developed the BioM2MetDisease database, which currently documents 2681 entries of relationships between 1147 biomolecules (miRNAs, metabolites and small molecules/drugs) and 78 metabolic diseases across 14 species. Each entry includes biomolecule category, species, biomolecule name, disease name, dysregulation pattern, experimental technique, a brief description of metabolic disease-biomolecule relationships, the reference, additional annotation information etc. BioM2MetDisease provides a user-friendly interface to explore and retrieve all data conveniently. A submission page was also offered for researchers to submit new associations between biomolecules and metabolic diseases. BioM2MetDisease provides a comprehensive resource for studying biology molecules act in metabolic diseases, and it is helpful for understanding the molecular mechanisms and developing novel therapeutics for metabolic diseases. Database URL: http://www.bio-bigdata.com/BioM2MetDisease/ Oxford University Press 2017-05-12 /pmc/articles/PMC5467570/ /pubmed/28605773 http://dx.doi.org/10.1093/database/bax037 Text en © The Author(s) 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Xu, Yanjun
Yang, Haixiu
Wu, Tan
Dong, Qun
Sun, Zeguo
Shang, Desi
Li, Feng
Xu, Yingqi
Su, Fei
Liu, Siyao
Zhang, Yunpeng
Li, Xia
BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title_full BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title_fullStr BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title_full_unstemmed BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title_short BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases
title_sort biom2metdisease: a manually curated database for associations between micrornas, metabolites, small molecules and metabolic diseases
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467570/
https://www.ncbi.nlm.nih.gov/pubmed/28605773
http://dx.doi.org/10.1093/database/bax037
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