Cargando…

Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

BACKGROUND: The presence of low complexity and repeated regions in genomes often results in difficulties to assemble sequencing data into full chromosomes. However, the availability of full genome scaffolds is essential to several investigations, regarding for instance the evolution of entire clades...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jourdier, Etienne, Baudry, Lyam, Poggi-Parodi, Dante, Vicq, Yoan, Koszul, Romain, Margeot, Antoine, Marbouty, Martial, Bidard, Frédérique
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469131/ https://www.ncbi.nlm.nih.gov/pubmed/28616075 http://dx.doi.org/10.1186/s13068-017-0837-6

Ejemplares similares

Correction to: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes
por: Jourdier, Etienne, et al.
Publicado: (2018)

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
por: Marbouty, Martial, et al.
Publicado: (2017)

MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries
por: Baudry, Lyam, et al.
Publicado: (2019)

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
por: Pirayre, Aurélie, et al.
Publicado: (2020)

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
por: Poggi-Parodi, Dante, et al.
Publicado: (2014)

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
por: Baudry, Lyam, et al.
Publicado: (2020)

Effect of the res2 transcription factor gene deletion on protein secretion and stress response in the hyperproducer strain Trichoderma reesei Rut-C30
por: Alharake, Jawad, et al.
Publicado: (2023)

High-quality genome (re)assembly using chromosomal contact data
por: Marie-Nelly, Hervé, et al.
Publicado: (2014)

Cellulase activity mapping of Trichoderma reesei cultivated in sugar mixtures under fed-batch conditions
por: Jourdier, Etienne, et al.
Publicado: (2013)

A new stoichiometric miniaturization strategy for screening of industrial microbial strains: application to cellulase hyper-producing Trichoderma reesei strains
por: Jourdier, Etienne, et al.
Publicado: (2012)

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction
por: Ivanova, Christa, et al.
Publicado: (2017)

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
por: Lichius, Alexander, et al.
Publicado: (2015)

Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
por: Lichius, Alexander, et al.
Publicado: (2015)

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
por: Ghassemi, Sara, et al.
Publicado: (2015)

MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
por: Marbouty, Martial, et al.
Publicado: (2021)

Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community
por: Lamy-Besnier, Quentin, et al.
Publicado: (2021)

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains
por: Herpoël-Gimbert, Isabelle, et al.
Publicado: (2008)

Targets of light signalling in Trichoderma reesei
por: Tisch, Doris, et al.
Publicado: (2013)

Serpentine: a flexible 2D binning method for differential Hi-C analysis
por: Baudry, Lyam, et al.
Publicado: (2020)

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation
por: Portnoy, Thomas, et al.
Publicado: (2011)

Normalization of a chromosomal contact map
por: Cournac, Axel, et al.
Publicado: (2012)

Genetic engineering of Trichoderma reesei cellulases and their production
por: Druzhinina, Irina S., et al.
Publicado: (2017)

The phenomenon of degeneration of industrial Trichoderma reesei strains
por: Martzy, R., et al.
Publicado: (2021)

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei
por: Yang, Dongqing, et al.
Publicado: (2015)

Erythritol production on wheat straw using Trichoderma reesei
por: Jovanović, Birgit, et al.
Publicado: (2014)

The impact of chromatin remodelling on cellulase expression in Trichoderma reesei
por: Mello-de-Sousa, Thiago M., et al.
Publicado: (2015)

In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei
por: Derntl, Christian, et al.
Publicado: (2017)

The Promoter Toolbox for Recombinant Gene Expression in Trichoderma reesei
por: Fitz, Elisabeth, et al.
Publicado: (2018)

Constitutive hyperproduction of sorbicillinoids in Trichoderma reesei ZC121
por: Li, Chengcheng, et al.
Publicado: (2018)

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
por: Marbouty, Martial, et al.
Publicado: (2014)

Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum
por: Böhm, Kati, et al.
Publicado: (2020)

Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei
por: Derntl, Christian, et al.
Publicado: (2015)

Genome wide analysis of protein production load in Trichoderma reesei
por: Pakula, Tiina M., et al.
Publicado: (2016)

Influence of cis Element Arrangement on Promoter Strength in Trichoderma reesei
por: Kiesenhofer, Daniel P., et al.
Publicado: (2017)

Extracellular vesicles carry cellulases in the industrial fungus Trichoderma reesei
por: de Paula, Renato Graciano, et al.
Publicado: (2019)

Heterologous expression of Phanerochaete chrysosporium cellobiose dehydrogenase in Trichoderma reesei
por: Wohlschlager, Lena, et al.
Publicado: (2021)

A Putative Lignin Copper Oxidase from Trichoderma reesei
por: Daou, Mariane, et al.
Publicado: (2021)

Dissecting Cellular Function and Distribution of β-Glucosidases in Trichoderma reesei
por: Pang, Ai-Ping, et al.
Publicado: (2021)

RGS4 impacts carbohydrate and siderophore metabolism in Trichoderma reesei
por: Schalamun, Miriam, et al.
Publicado: (2023)

Current genetic strategies to investigate gene functions in Trichoderma reesei
por: Ma, Chixiang, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_ohjimo3kd5vrdk1bgc30l0d9m3