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rdml: A Mathematica package for parsing and importing Real-Time qPCR data
OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enabl...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469176/ https://www.ncbi.nlm.nih.gov/pubmed/28606167 http://dx.doi.org/10.1186/s13104-017-2533-9 |
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author | Magno, Ramiro Duarte, Isabel Andrade, Raquel P. Palmeirim, Isabel |
author_facet | Magno, Ramiro Duarte, Isabel Andrade, Raquel P. Palmeirim, Isabel |
author_sort | Magno, Ramiro |
collection | PubMed |
description | OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enable the straightforward archiving and sharing of qPCR data and its associated experimental information, an XML-based data standard was developed—the Real-Time PCR data markup language (RDML)—devised by the RDML consortium. Here, we present rdml, a package to parse and import RDML data into Mathematica, allowing the quick loading and extraction of relevant data, thus promoting the re-analysis, meta-analysis or experimental re-validation of gene expression data deposited in RDML format. |
format | Online Article Text |
id | pubmed-5469176 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-54691762017-06-14 rdml: A Mathematica package for parsing and importing Real-Time qPCR data Magno, Ramiro Duarte, Isabel Andrade, Raquel P. Palmeirim, Isabel BMC Res Notes Research Note OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enable the straightforward archiving and sharing of qPCR data and its associated experimental information, an XML-based data standard was developed—the Real-Time PCR data markup language (RDML)—devised by the RDML consortium. Here, we present rdml, a package to parse and import RDML data into Mathematica, allowing the quick loading and extraction of relevant data, thus promoting the re-analysis, meta-analysis or experimental re-validation of gene expression data deposited in RDML format. BioMed Central 2017-06-12 /pmc/articles/PMC5469176/ /pubmed/28606167 http://dx.doi.org/10.1186/s13104-017-2533-9 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Note Magno, Ramiro Duarte, Isabel Andrade, Raquel P. Palmeirim, Isabel rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title | rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title_full | rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title_fullStr | rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title_full_unstemmed | rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title_short | rdml: A Mathematica package for parsing and importing Real-Time qPCR data |
title_sort | rdml: a mathematica package for parsing and importing real-time qpcr data |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469176/ https://www.ncbi.nlm.nih.gov/pubmed/28606167 http://dx.doi.org/10.1186/s13104-017-2533-9 |
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