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rdml: A Mathematica package for parsing and importing Real-Time qPCR data

OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enabl...

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Detalles Bibliográficos
Autores principales: Magno, Ramiro, Duarte, Isabel, Andrade, Raquel P., Palmeirim, Isabel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469176/
https://www.ncbi.nlm.nih.gov/pubmed/28606167
http://dx.doi.org/10.1186/s13104-017-2533-9
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author Magno, Ramiro
Duarte, Isabel
Andrade, Raquel P.
Palmeirim, Isabel
author_facet Magno, Ramiro
Duarte, Isabel
Andrade, Raquel P.
Palmeirim, Isabel
author_sort Magno, Ramiro
collection PubMed
description OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enable the straightforward archiving and sharing of qPCR data and its associated experimental information, an XML-based data standard was developed—the Real-Time PCR data markup language (RDML)—devised by the RDML consortium. Here, we present rdml, a package to parse and import RDML data into Mathematica, allowing the quick loading and extraction of relevant data, thus promoting the re-analysis, meta-analysis or experimental re-validation of gene expression data deposited in RDML format.
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spelling pubmed-54691762017-06-14 rdml: A Mathematica package for parsing and importing Real-Time qPCR data Magno, Ramiro Duarte, Isabel Andrade, Raquel P. Palmeirim, Isabel BMC Res Notes Research Note OBJECTIVE: The purpose and objective of the research presented is to provide a package for easy importing of Real-Time PCR data markup language (RDML) data to Mathematica. RESULTS: Real-Time qPCR is the most widely used experimental method for the accurate quantification of gene expression. To enable the straightforward archiving and sharing of qPCR data and its associated experimental information, an XML-based data standard was developed—the Real-Time PCR data markup language (RDML)—devised by the RDML consortium. Here, we present rdml, a package to parse and import RDML data into Mathematica, allowing the quick loading and extraction of relevant data, thus promoting the re-analysis, meta-analysis or experimental re-validation of gene expression data deposited in RDML format. BioMed Central 2017-06-12 /pmc/articles/PMC5469176/ /pubmed/28606167 http://dx.doi.org/10.1186/s13104-017-2533-9 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Magno, Ramiro
Duarte, Isabel
Andrade, Raquel P.
Palmeirim, Isabel
rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title_full rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title_fullStr rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title_full_unstemmed rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title_short rdml: A Mathematica package for parsing and importing Real-Time qPCR data
title_sort rdml: a mathematica package for parsing and importing real-time qpcr data
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469176/
https://www.ncbi.nlm.nih.gov/pubmed/28606167
http://dx.doi.org/10.1186/s13104-017-2533-9
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