Cargando…

Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation

Microbial nitrogen transformation processes such as denitrification represent major sources of the potent greenhouse gas nitrous oxide (N(2)O). Soil biochar amendment has been shown to significantly decrease N(2)O emissions in various soils. However, the effect of biochar on the structure and functi...

Descripción completa

Detalles Bibliográficos
Autores principales: Harter, Johannes, El-Hadidi, Mohamed, Huson, Daniel H., Kappler, Andreas, Behrens, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469825/
https://www.ncbi.nlm.nih.gov/pubmed/28611409
http://dx.doi.org/10.1038/s41598-017-03282-y
_version_ 1783243651186425856
author Harter, Johannes
El-Hadidi, Mohamed
Huson, Daniel H.
Kappler, Andreas
Behrens, Sebastian
author_facet Harter, Johannes
El-Hadidi, Mohamed
Huson, Daniel H.
Kappler, Andreas
Behrens, Sebastian
author_sort Harter, Johannes
collection PubMed
description Microbial nitrogen transformation processes such as denitrification represent major sources of the potent greenhouse gas nitrous oxide (N(2)O). Soil biochar amendment has been shown to significantly decrease N(2)O emissions in various soils. However, the effect of biochar on the structure and function of microbial communities that actively perform nitrogen redox transformations has not been studied in detail yet. To analyse the community composition of actively denitrifying and N(2)O-reducing microbial communities, we collected RNA samples at different time points from a soil microcosm experiment conducted under denitrifying conditions and performed Illumina amplicon sequencing targeting nirK, typical nosZ and atypical nosZ mRNA transcripts. Within 10 days, biochar significantly increased the diversity of nirK and typical nosZ transcripts and resulted in taxonomic shifts among the typical nosZ-expressing microbial community. Furthermore, biochar addition led to a significant increase in transcript production among microbial species that are specialized on direct N(2)O reduction from the environment. Our results point towards a potential coupling of biochar-induced N(2)O emission reduction and an increase in microbial N(2)O reduction activity among specific groups of typical and atypical N(2)O reducers. However, experiments with other soils and biochars will be required to verify the transferability of these findings to other soil-biochar systems.
format Online
Article
Text
id pubmed-5469825
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-54698252017-06-19 Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation Harter, Johannes El-Hadidi, Mohamed Huson, Daniel H. Kappler, Andreas Behrens, Sebastian Sci Rep Article Microbial nitrogen transformation processes such as denitrification represent major sources of the potent greenhouse gas nitrous oxide (N(2)O). Soil biochar amendment has been shown to significantly decrease N(2)O emissions in various soils. However, the effect of biochar on the structure and function of microbial communities that actively perform nitrogen redox transformations has not been studied in detail yet. To analyse the community composition of actively denitrifying and N(2)O-reducing microbial communities, we collected RNA samples at different time points from a soil microcosm experiment conducted under denitrifying conditions and performed Illumina amplicon sequencing targeting nirK, typical nosZ and atypical nosZ mRNA transcripts. Within 10 days, biochar significantly increased the diversity of nirK and typical nosZ transcripts and resulted in taxonomic shifts among the typical nosZ-expressing microbial community. Furthermore, biochar addition led to a significant increase in transcript production among microbial species that are specialized on direct N(2)O reduction from the environment. Our results point towards a potential coupling of biochar-induced N(2)O emission reduction and an increase in microbial N(2)O reduction activity among specific groups of typical and atypical N(2)O reducers. However, experiments with other soils and biochars will be required to verify the transferability of these findings to other soil-biochar systems. Nature Publishing Group UK 2017-06-13 /pmc/articles/PMC5469825/ /pubmed/28611409 http://dx.doi.org/10.1038/s41598-017-03282-y Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Harter, Johannes
El-Hadidi, Mohamed
Huson, Daniel H.
Kappler, Andreas
Behrens, Sebastian
Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title_full Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title_fullStr Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title_full_unstemmed Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title_short Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N(2)O formation
title_sort soil biochar amendment affects the diversity of nosz transcripts: implications for n(2)o formation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469825/
https://www.ncbi.nlm.nih.gov/pubmed/28611409
http://dx.doi.org/10.1038/s41598-017-03282-y
work_keys_str_mv AT harterjohannes soilbiocharamendmentaffectsthediversityofnosztranscriptsimplicationsforn2oformation
AT elhadidimohamed soilbiocharamendmentaffectsthediversityofnosztranscriptsimplicationsforn2oformation
AT husondanielh soilbiocharamendmentaffectsthediversityofnosztranscriptsimplicationsforn2oformation
AT kapplerandreas soilbiocharamendmentaffectsthediversityofnosztranscriptsimplicationsforn2oformation
AT behrenssebastian soilbiocharamendmentaffectsthediversityofnosztranscriptsimplicationsforn2oformation