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Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels

The persistence of small populations is influenced by genetic structure and functional connectivity. We used two network-based approaches to understand the persistence of the northern Idaho ground squirrel (Urocitellus brunneus) and the southern Idaho ground squirrel (U. endemicus), two congeners of...

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Autores principales: Zero, Victoria H., Barocas, Adi, Jochimsen, Denim M., Pelletier, Agnès, Giroux-Bougard, Xavier, Trumbo, Daryl R., Castillo, Jessica A., Evans Mack, Diane, Linnell, Mark A., Pigg, Rachel M., Hoisington-Lopez, Jessica, Spear, Stephen F., Murphy, Melanie A., Waits, Lisette P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469978/
https://www.ncbi.nlm.nih.gov/pubmed/28659969
http://dx.doi.org/10.3389/fgene.2017.00081
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author Zero, Victoria H.
Barocas, Adi
Jochimsen, Denim M.
Pelletier, Agnès
Giroux-Bougard, Xavier
Trumbo, Daryl R.
Castillo, Jessica A.
Evans Mack, Diane
Linnell, Mark A.
Pigg, Rachel M.
Hoisington-Lopez, Jessica
Spear, Stephen F.
Murphy, Melanie A.
Waits, Lisette P.
author_facet Zero, Victoria H.
Barocas, Adi
Jochimsen, Denim M.
Pelletier, Agnès
Giroux-Bougard, Xavier
Trumbo, Daryl R.
Castillo, Jessica A.
Evans Mack, Diane
Linnell, Mark A.
Pigg, Rachel M.
Hoisington-Lopez, Jessica
Spear, Stephen F.
Murphy, Melanie A.
Waits, Lisette P.
author_sort Zero, Victoria H.
collection PubMed
description The persistence of small populations is influenced by genetic structure and functional connectivity. We used two network-based approaches to understand the persistence of the northern Idaho ground squirrel (Urocitellus brunneus) and the southern Idaho ground squirrel (U. endemicus), two congeners of conservation concern. These graph theoretic approaches are conventionally applied to social or transportation networks, but here are used to study population persistence and connectivity. Population graph analyses revealed that local extinction rapidly reduced connectivity for the southern species, while connectivity for the northern species could be maintained following local extinction. Results from gravity models complemented those of population graph analyses, and indicated that potential vegetation productivity and topography drove connectivity in the northern species. For the southern species, development (roads) and small-scale topography reduced connectivity, while greater potential vegetation productivity increased connectivity. Taken together, the results of the two network-based methods (population graph analyses and gravity models) suggest the need for increased conservation action for the southern species, and that management efforts have been effective at maintaining habitat quality throughout the current range of the northern species. To prevent further declines, we encourage the continuation of management efforts for the northern species, whereas conservation of the southern species requires active management and additional measures to curtail habitat fragmentation. Our combination of population graph analyses and gravity models can inform conservation strategies of other species exhibiting patchy distributions.
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spelling pubmed-54699782017-06-28 Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels Zero, Victoria H. Barocas, Adi Jochimsen, Denim M. Pelletier, Agnès Giroux-Bougard, Xavier Trumbo, Daryl R. Castillo, Jessica A. Evans Mack, Diane Linnell, Mark A. Pigg, Rachel M. Hoisington-Lopez, Jessica Spear, Stephen F. Murphy, Melanie A. Waits, Lisette P. Front Genet Genetics The persistence of small populations is influenced by genetic structure and functional connectivity. We used two network-based approaches to understand the persistence of the northern Idaho ground squirrel (Urocitellus brunneus) and the southern Idaho ground squirrel (U. endemicus), two congeners of conservation concern. These graph theoretic approaches are conventionally applied to social or transportation networks, but here are used to study population persistence and connectivity. Population graph analyses revealed that local extinction rapidly reduced connectivity for the southern species, while connectivity for the northern species could be maintained following local extinction. Results from gravity models complemented those of population graph analyses, and indicated that potential vegetation productivity and topography drove connectivity in the northern species. For the southern species, development (roads) and small-scale topography reduced connectivity, while greater potential vegetation productivity increased connectivity. Taken together, the results of the two network-based methods (population graph analyses and gravity models) suggest the need for increased conservation action for the southern species, and that management efforts have been effective at maintaining habitat quality throughout the current range of the northern species. To prevent further declines, we encourage the continuation of management efforts for the northern species, whereas conservation of the southern species requires active management and additional measures to curtail habitat fragmentation. Our combination of population graph analyses and gravity models can inform conservation strategies of other species exhibiting patchy distributions. Frontiers Media S.A. 2017-06-14 /pmc/articles/PMC5469978/ /pubmed/28659969 http://dx.doi.org/10.3389/fgene.2017.00081 Text en Copyright © 2017 Zero, Barocas, Jochimsen, Pelletier, Giroux-Bougard, Trumbo, Castillo, Evans Mack, Linnell, Pigg, Hoisington-Lopez, Spear, Murphy and Waits. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zero, Victoria H.
Barocas, Adi
Jochimsen, Denim M.
Pelletier, Agnès
Giroux-Bougard, Xavier
Trumbo, Daryl R.
Castillo, Jessica A.
Evans Mack, Diane
Linnell, Mark A.
Pigg, Rachel M.
Hoisington-Lopez, Jessica
Spear, Stephen F.
Murphy, Melanie A.
Waits, Lisette P.
Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title_full Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title_fullStr Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title_full_unstemmed Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title_short Complementary Network-Based Approaches for Exploring Genetic Structure and Functional Connectivity in Two Vulnerable, Endemic Ground Squirrels
title_sort complementary network-based approaches for exploring genetic structure and functional connectivity in two vulnerable, endemic ground squirrels
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469978/
https://www.ncbi.nlm.nih.gov/pubmed/28659969
http://dx.doi.org/10.3389/fgene.2017.00081
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