Cargando…
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis
BACKGROUND: Global scale brain research collaborations such as the ENIGMA (Enhancing Neuro Imaging Genetics through Meta Analysis) consortium are beginning to collect data in large quantity and to conduct meta-analyses using uniformed protocols. It becomes strategically important that the results ca...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5471941/ https://www.ncbi.nlm.nih.gov/pubmed/28617224 http://dx.doi.org/10.1186/s12859-017-1634-8 |
_version_ | 1783244049906401280 |
---|---|
author | Zhang, Guohao Kochunov, Peter Hong, Elliot Kelly, Sinead Whelan, Christopher Jahanshad, Neda Thompson, Paul Chen, Jian |
author_facet | Zhang, Guohao Kochunov, Peter Hong, Elliot Kelly, Sinead Whelan, Christopher Jahanshad, Neda Thompson, Paul Chen, Jian |
author_sort | Zhang, Guohao |
collection | PubMed |
description | BACKGROUND: Global scale brain research collaborations such as the ENIGMA (Enhancing Neuro Imaging Genetics through Meta Analysis) consortium are beginning to collect data in large quantity and to conduct meta-analyses using uniformed protocols. It becomes strategically important that the results can be communicated among brain scientists effectively. Traditional graphs and charts failed to convey the complex shapes of brain structures which are essential to the understanding of the result statistics from the analyses. These problems could be addressed using interactive visualization strategies that can link those statistics with brain structures in order to provide a better interface to understand brain research results. RESULTS: We present ENIGMA-Viewer, an interactive web-based visualization tool for brain scientists to compare statistics such as effect sizes from meta-analysis results on standardized ROIs (regions-of-interest) across multiple studies. The tool incorporates visualization design principles such as focus+context and visual data fusion to enable users to better understand the statistics on brain structures. To demonstrate the usability of the tool, three examples using recent research data are discussed via case studies. CONCLUSIONS: ENIGMA-Viewer supports presentations and communications of brain research results through effective visualization designs. By linking visualizations of both statistics and structures, users can gain more insights into the presented data that are otherwise difficult to obtain. ENIGMA-Viewer is an open-source tool, the source code and sample data are publicly accessible through the NITRC website (http://www.nitrc.org/projects/enigmaviewer_20). The tool can also be directly accessed online (http://enigma-viewer.org). |
format | Online Article Text |
id | pubmed-5471941 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-54719412017-06-19 ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis Zhang, Guohao Kochunov, Peter Hong, Elliot Kelly, Sinead Whelan, Christopher Jahanshad, Neda Thompson, Paul Chen, Jian BMC Bioinformatics Research BACKGROUND: Global scale brain research collaborations such as the ENIGMA (Enhancing Neuro Imaging Genetics through Meta Analysis) consortium are beginning to collect data in large quantity and to conduct meta-analyses using uniformed protocols. It becomes strategically important that the results can be communicated among brain scientists effectively. Traditional graphs and charts failed to convey the complex shapes of brain structures which are essential to the understanding of the result statistics from the analyses. These problems could be addressed using interactive visualization strategies that can link those statistics with brain structures in order to provide a better interface to understand brain research results. RESULTS: We present ENIGMA-Viewer, an interactive web-based visualization tool for brain scientists to compare statistics such as effect sizes from meta-analysis results on standardized ROIs (regions-of-interest) across multiple studies. The tool incorporates visualization design principles such as focus+context and visual data fusion to enable users to better understand the statistics on brain structures. To demonstrate the usability of the tool, three examples using recent research data are discussed via case studies. CONCLUSIONS: ENIGMA-Viewer supports presentations and communications of brain research results through effective visualization designs. By linking visualizations of both statistics and structures, users can gain more insights into the presented data that are otherwise difficult to obtain. ENIGMA-Viewer is an open-source tool, the source code and sample data are publicly accessible through the NITRC website (http://www.nitrc.org/projects/enigmaviewer_20). The tool can also be directly accessed online (http://enigma-viewer.org). BioMed Central 2017-06-06 /pmc/articles/PMC5471941/ /pubmed/28617224 http://dx.doi.org/10.1186/s12859-017-1634-8 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Zhang, Guohao Kochunov, Peter Hong, Elliot Kelly, Sinead Whelan, Christopher Jahanshad, Neda Thompson, Paul Chen, Jian ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title | ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title_full | ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title_fullStr | ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title_full_unstemmed | ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title_short | ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
title_sort | enigma-viewer: interactive visualization strategies for conveying effect sizes in meta-analysis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5471941/ https://www.ncbi.nlm.nih.gov/pubmed/28617224 http://dx.doi.org/10.1186/s12859-017-1634-8 |
work_keys_str_mv | AT zhangguohao enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT kochunovpeter enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT hongelliot enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT kellysinead enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT whelanchristopher enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT jahanshadneda enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT thompsonpaul enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis AT chenjian enigmaviewerinteractivevisualizationstrategiesforconveyingeffectsizesinmetaanalysis |