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On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum

[Image: see text] We present an on-the-fly ab initio semiclassical study of vibrational energy levels of glycine, calculated by Fourier transform of the wavepacket correlation function. It is based on a multiple coherent states approach integrated with monodromy matrix regularization for chaotic dyn...

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Autores principales: Gabas, Fabio, Conte, Riccardo, Ceotto, Michele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472367/
https://www.ncbi.nlm.nih.gov/pubmed/28489368
http://dx.doi.org/10.1021/acs.jctc.6b01018
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author Gabas, Fabio
Conte, Riccardo
Ceotto, Michele
author_facet Gabas, Fabio
Conte, Riccardo
Ceotto, Michele
author_sort Gabas, Fabio
collection PubMed
description [Image: see text] We present an on-the-fly ab initio semiclassical study of vibrational energy levels of glycine, calculated by Fourier transform of the wavepacket correlation function. It is based on a multiple coherent states approach integrated with monodromy matrix regularization for chaotic dynamics. All four lowest-energy glycine conformers are investigated by means of single-trajectory semiclassical spectra obtained upon classical evolution of on-the-fly trajectories with harmonic zero-point energy. For the most stable conformer I, direct dynamics trajectories are also run for each vibrational mode with energy equal to the first harmonic excitation. An analysis of trajectories evolved up to 50 000 atomic time units demonstrates that, in this time span, conformers II and III can be considered as isolated species, while conformers I and IV show a pretty facile interconversion. Therefore, previous perturbative studies based on the assumption of isolated conformers are often reliable but might be not completely appropriate in the case of conformer IV and conformer I for which interconversion occurs promptly.
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spelling pubmed-54723672017-06-16 On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum Gabas, Fabio Conte, Riccardo Ceotto, Michele J Chem Theory Comput [Image: see text] We present an on-the-fly ab initio semiclassical study of vibrational energy levels of glycine, calculated by Fourier transform of the wavepacket correlation function. It is based on a multiple coherent states approach integrated with monodromy matrix regularization for chaotic dynamics. All four lowest-energy glycine conformers are investigated by means of single-trajectory semiclassical spectra obtained upon classical evolution of on-the-fly trajectories with harmonic zero-point energy. For the most stable conformer I, direct dynamics trajectories are also run for each vibrational mode with energy equal to the first harmonic excitation. An analysis of trajectories evolved up to 50 000 atomic time units demonstrates that, in this time span, conformers II and III can be considered as isolated species, while conformers I and IV show a pretty facile interconversion. Therefore, previous perturbative studies based on the assumption of isolated conformers are often reliable but might be not completely appropriate in the case of conformer IV and conformer I for which interconversion occurs promptly. American Chemical Society 2017-05-10 2017-06-13 /pmc/articles/PMC5472367/ /pubmed/28489368 http://dx.doi.org/10.1021/acs.jctc.6b01018 Text en Copyright © 2017 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Gabas, Fabio
Conte, Riccardo
Ceotto, Michele
On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title_full On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title_fullStr On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title_full_unstemmed On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title_short On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum
title_sort on-the-fly ab initio semiclassical calculation of glycine vibrational spectrum
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472367/
https://www.ncbi.nlm.nih.gov/pubmed/28489368
http://dx.doi.org/10.1021/acs.jctc.6b01018
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