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Reconstruction of stochastic temporal networks through diffusive arrival times
Temporal networks have opened a new dimension in defining and quantification of complex interacting systems. Our ability to identify and reproduce time-resolved interaction patterns is, however, limited by the restricted access to empirical individual-level data. Here we propose an inverse modelling...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472785/ https://www.ncbi.nlm.nih.gov/pubmed/28604687 http://dx.doi.org/10.1038/ncomms15729 |
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author | Li, Xun Li, Xiang |
author_facet | Li, Xun Li, Xiang |
author_sort | Li, Xun |
collection | PubMed |
description | Temporal networks have opened a new dimension in defining and quantification of complex interacting systems. Our ability to identify and reproduce time-resolved interaction patterns is, however, limited by the restricted access to empirical individual-level data. Here we propose an inverse modelling method based on first-arrival observations of the diffusion process taking place on temporal networks. We describe an efficient coordinate-ascent implementation for inferring stochastic temporal networks that builds in particular but not exclusively on the null model assumption of mutually independent interaction sequences at the dyadic level. The results of benchmark tests applied on both synthesized and empirical network data sets confirm the validity of our algorithm, showing the feasibility of statistically accurate inference of temporal networks only from moderate-sized samples of diffusion cascades. Our approach provides an effective and flexible scheme for the temporally augmented inverse problems of network reconstruction and has potential in a broad variety of applications. |
format | Online Article Text |
id | pubmed-5472785 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-54727852017-06-28 Reconstruction of stochastic temporal networks through diffusive arrival times Li, Xun Li, Xiang Nat Commun Article Temporal networks have opened a new dimension in defining and quantification of complex interacting systems. Our ability to identify and reproduce time-resolved interaction patterns is, however, limited by the restricted access to empirical individual-level data. Here we propose an inverse modelling method based on first-arrival observations of the diffusion process taking place on temporal networks. We describe an efficient coordinate-ascent implementation for inferring stochastic temporal networks that builds in particular but not exclusively on the null model assumption of mutually independent interaction sequences at the dyadic level. The results of benchmark tests applied on both synthesized and empirical network data sets confirm the validity of our algorithm, showing the feasibility of statistically accurate inference of temporal networks only from moderate-sized samples of diffusion cascades. Our approach provides an effective and flexible scheme for the temporally augmented inverse problems of network reconstruction and has potential in a broad variety of applications. Nature Publishing Group 2017-06-12 /pmc/articles/PMC5472785/ /pubmed/28604687 http://dx.doi.org/10.1038/ncomms15729 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Li, Xun Li, Xiang Reconstruction of stochastic temporal networks through diffusive arrival times |
title | Reconstruction of stochastic temporal networks through diffusive arrival times |
title_full | Reconstruction of stochastic temporal networks through diffusive arrival times |
title_fullStr | Reconstruction of stochastic temporal networks through diffusive arrival times |
title_full_unstemmed | Reconstruction of stochastic temporal networks through diffusive arrival times |
title_short | Reconstruction of stochastic temporal networks through diffusive arrival times |
title_sort | reconstruction of stochastic temporal networks through diffusive arrival times |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472785/ https://www.ncbi.nlm.nih.gov/pubmed/28604687 http://dx.doi.org/10.1038/ncomms15729 |
work_keys_str_mv | AT lixun reconstructionofstochastictemporalnetworksthroughdiffusivearrivaltimes AT lixiang reconstructionofstochastictemporalnetworksthroughdiffusivearrivaltimes |