Cargando…

Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry

Mass cytometry presents an exceptional opportunity to interrogate the biology of highly heterogeneous cell populations, owing to the ability to collect highly parametric proteomic data at a single cell level. However, sample-to-sample variability, due to antibody staining and/or instrument sensitivi...

Descripción completa

Detalles Bibliográficos
Autores principales: McCarthy, Ryan L., Mak, Duncan H., Burks, Jared K., Barton, Michelle C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5476666/
https://www.ncbi.nlm.nih.gov/pubmed/28630464
http://dx.doi.org/10.1038/s41598-017-03610-2
_version_ 1783244635179581440
author McCarthy, Ryan L.
Mak, Duncan H.
Burks, Jared K.
Barton, Michelle C.
author_facet McCarthy, Ryan L.
Mak, Duncan H.
Burks, Jared K.
Barton, Michelle C.
author_sort McCarthy, Ryan L.
collection PubMed
description Mass cytometry presents an exceptional opportunity to interrogate the biology of highly heterogeneous cell populations, owing to the ability to collect highly parametric proteomic data at a single cell level. However, sample-to-sample variability, due to antibody staining and/or instrument sensitivity, can introduce substantial artifacts into the data, which can in turn lead to erroneous conclusions. This variability can be eliminated by sample barcoding which enables samples to be pooled, stained and run simultaneously. Existing mass cytometry barcoding approaches require time intensive labeling, reduce the number of biologically meaningful parameters and/or rely on expensive reagents. We present an approach utilizing monoisotopic cisplatin to perform cell barcoding that does not require cell permeabilization, can be completed in 10 minutes and can be utilized in combination with existing barcoding techniques to greatly increase the number of samples which can be multiplexed to improve throughput and consistency.
format Online
Article
Text
id pubmed-5476666
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-54766662017-06-23 Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry McCarthy, Ryan L. Mak, Duncan H. Burks, Jared K. Barton, Michelle C. Sci Rep Article Mass cytometry presents an exceptional opportunity to interrogate the biology of highly heterogeneous cell populations, owing to the ability to collect highly parametric proteomic data at a single cell level. However, sample-to-sample variability, due to antibody staining and/or instrument sensitivity, can introduce substantial artifacts into the data, which can in turn lead to erroneous conclusions. This variability can be eliminated by sample barcoding which enables samples to be pooled, stained and run simultaneously. Existing mass cytometry barcoding approaches require time intensive labeling, reduce the number of biologically meaningful parameters and/or rely on expensive reagents. We present an approach utilizing monoisotopic cisplatin to perform cell barcoding that does not require cell permeabilization, can be completed in 10 minutes and can be utilized in combination with existing barcoding techniques to greatly increase the number of samples which can be multiplexed to improve throughput and consistency. Nature Publishing Group UK 2017-06-19 /pmc/articles/PMC5476666/ /pubmed/28630464 http://dx.doi.org/10.1038/s41598-017-03610-2 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
McCarthy, Ryan L.
Mak, Duncan H.
Burks, Jared K.
Barton, Michelle C.
Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title_full Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title_fullStr Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title_full_unstemmed Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title_short Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
title_sort rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5476666/
https://www.ncbi.nlm.nih.gov/pubmed/28630464
http://dx.doi.org/10.1038/s41598-017-03610-2
work_keys_str_mv AT mccarthyryanl rapidmonoisotopiccisplatinbasedbarcodingformultiplexedmasscytometry
AT makduncanh rapidmonoisotopiccisplatinbasedbarcodingformultiplexedmasscytometry
AT burksjaredk rapidmonoisotopiccisplatinbasedbarcodingformultiplexedmasscytometry
AT bartonmichellec rapidmonoisotopiccisplatinbasedbarcodingformultiplexedmasscytometry