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Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods

Major new advances in synthetic chemistry methods are typically reported using simple, non-standardized reaction substrates, and reaction failures are rarely documented. This makes the evaluation and choice of a synthetic method difficult. We report a standardized complex molecule diagnostic approac...

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Autores principales: Kutchukian, Peter S., Dropinski, James F., Dykstra, Kevin D., Li, Bing, DiRocco, Daniel A., Streckfuss, Eric C., Campeau, Louis-Charles, Cernak, Tim, Vachal, Petr, Davies, Ian W., Krska, Shane W., Dreher, Spencer D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5477042/
https://www.ncbi.nlm.nih.gov/pubmed/28660032
http://dx.doi.org/10.1039/c5sc04751j
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author Kutchukian, Peter S.
Dropinski, James F.
Dykstra, Kevin D.
Li, Bing
DiRocco, Daniel A.
Streckfuss, Eric C.
Campeau, Louis-Charles
Cernak, Tim
Vachal, Petr
Davies, Ian W.
Krska, Shane W.
Dreher, Spencer D.
author_facet Kutchukian, Peter S.
Dropinski, James F.
Dykstra, Kevin D.
Li, Bing
DiRocco, Daniel A.
Streckfuss, Eric C.
Campeau, Louis-Charles
Cernak, Tim
Vachal, Petr
Davies, Ian W.
Krska, Shane W.
Dreher, Spencer D.
author_sort Kutchukian, Peter S.
collection PubMed
description Major new advances in synthetic chemistry methods are typically reported using simple, non-standardized reaction substrates, and reaction failures are rarely documented. This makes the evaluation and choice of a synthetic method difficult. We report a standardized complex molecule diagnostic approach using collections of relevant drug-like molecules which we call chemistry informer libraries. With this approach, all chemistry results, successes and failures, can be documented to compare and evolve synthetic methods. To aid in the visualization of chemistry results in drug-like physicochemical space we have used an informatics methodology termed principal component analysis. We have validated this method using palladium- and copper-catalyzed reactions, including Suzuki–Miyaura, cyanation and Buchwald–Hartwig amination.
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spelling pubmed-54770422017-06-28 Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods Kutchukian, Peter S. Dropinski, James F. Dykstra, Kevin D. Li, Bing DiRocco, Daniel A. Streckfuss, Eric C. Campeau, Louis-Charles Cernak, Tim Vachal, Petr Davies, Ian W. Krska, Shane W. Dreher, Spencer D. Chem Sci Chemistry Major new advances in synthetic chemistry methods are typically reported using simple, non-standardized reaction substrates, and reaction failures are rarely documented. This makes the evaluation and choice of a synthetic method difficult. We report a standardized complex molecule diagnostic approach using collections of relevant drug-like molecules which we call chemistry informer libraries. With this approach, all chemistry results, successes and failures, can be documented to compare and evolve synthetic methods. To aid in the visualization of chemistry results in drug-like physicochemical space we have used an informatics methodology termed principal component analysis. We have validated this method using palladium- and copper-catalyzed reactions, including Suzuki–Miyaura, cyanation and Buchwald–Hartwig amination. Royal Society of Chemistry 2016-04-01 2016-01-26 /pmc/articles/PMC5477042/ /pubmed/28660032 http://dx.doi.org/10.1039/c5sc04751j Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0)
spellingShingle Chemistry
Kutchukian, Peter S.
Dropinski, James F.
Dykstra, Kevin D.
Li, Bing
DiRocco, Daniel A.
Streckfuss, Eric C.
Campeau, Louis-Charles
Cernak, Tim
Vachal, Petr
Davies, Ian W.
Krska, Shane W.
Dreher, Spencer D.
Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title_full Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title_fullStr Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title_full_unstemmed Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title_short Chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
title_sort chemistry informer libraries: a chemoinformatics enabled approach to evaluate and advance synthetic methods
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5477042/
https://www.ncbi.nlm.nih.gov/pubmed/28660032
http://dx.doi.org/10.1039/c5sc04751j
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