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Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting

Differentiating between different types of neurodegenerative diseases is not only crucial in clinical practice when treatment decisions have to be made, but also has a significant potential for the enrichment of clinical trials. The purpose of this study is to develop a classification framework for...

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Autores principales: Tong, Tong, Ledig, Christian, Guerrero, Ricardo, Schuh, Andreas, Koikkalainen, Juha, Tolonen, Antti, Rhodius, Hanneke, Barkhof, Frederik, Tijms, Betty, Lemstra, Afina W, Soininen, Hilkka, Remes, Anne M, Waldemar, Gunhild, Hasselbalch, Steen, Mecocci, Patrizia, Baroni, Marta, Lötjönen, Jyrki, Flier, Wiesje van der, Rueckert, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5479966/
https://www.ncbi.nlm.nih.gov/pubmed/28664032
http://dx.doi.org/10.1016/j.nicl.2017.06.012
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author Tong, Tong
Ledig, Christian
Guerrero, Ricardo
Schuh, Andreas
Koikkalainen, Juha
Tolonen, Antti
Rhodius, Hanneke
Barkhof, Frederik
Tijms, Betty
Lemstra, Afina W
Soininen, Hilkka
Remes, Anne M
Waldemar, Gunhild
Hasselbalch, Steen
Mecocci, Patrizia
Baroni, Marta
Lötjönen, Jyrki
Flier, Wiesje van der
Rueckert, Daniel
author_facet Tong, Tong
Ledig, Christian
Guerrero, Ricardo
Schuh, Andreas
Koikkalainen, Juha
Tolonen, Antti
Rhodius, Hanneke
Barkhof, Frederik
Tijms, Betty
Lemstra, Afina W
Soininen, Hilkka
Remes, Anne M
Waldemar, Gunhild
Hasselbalch, Steen
Mecocci, Patrizia
Baroni, Marta
Lötjönen, Jyrki
Flier, Wiesje van der
Rueckert, Daniel
author_sort Tong, Tong
collection PubMed
description Differentiating between different types of neurodegenerative diseases is not only crucial in clinical practice when treatment decisions have to be made, but also has a significant potential for the enrichment of clinical trials. The purpose of this study is to develop a classification framework for distinguishing the four most common neurodegenerative diseases, including Alzheimer's disease, frontotemporal lobe degeneration, Dementia with Lewy bodies and vascular dementia, as well as patients with subjective memory complaints. Different biomarkers including features from images (volume features, region-wise grading features) and non-imaging features (CSF measures) were extracted for each subject. In clinical practice, the prevalence of different dementia types is imbalanced, posing challenges for learning an effective classification model. Therefore, we propose the use of the RUSBoost algorithm in order to train classifiers and to handle the class imbalance training problem. Furthermore, a multi-class feature selection method based on sparsity is integrated into the proposed framework to improve the classification performance. It also provides a way for investigating the importance of different features and regions. Using a dataset of 500 subjects, the proposed framework achieved a high accuracy of 75.2% with a balanced accuracy of 69.3% for the five-class classification using ten-fold cross validation, which is significantly better than the results using support vector machine or random forest, demonstrating the feasibility of the proposed framework to support clinical decision making.
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spelling pubmed-54799662017-06-29 Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting Tong, Tong Ledig, Christian Guerrero, Ricardo Schuh, Andreas Koikkalainen, Juha Tolonen, Antti Rhodius, Hanneke Barkhof, Frederik Tijms, Betty Lemstra, Afina W Soininen, Hilkka Remes, Anne M Waldemar, Gunhild Hasselbalch, Steen Mecocci, Patrizia Baroni, Marta Lötjönen, Jyrki Flier, Wiesje van der Rueckert, Daniel Neuroimage Clin Regular Article Differentiating between different types of neurodegenerative diseases is not only crucial in clinical practice when treatment decisions have to be made, but also has a significant potential for the enrichment of clinical trials. The purpose of this study is to develop a classification framework for distinguishing the four most common neurodegenerative diseases, including Alzheimer's disease, frontotemporal lobe degeneration, Dementia with Lewy bodies and vascular dementia, as well as patients with subjective memory complaints. Different biomarkers including features from images (volume features, region-wise grading features) and non-imaging features (CSF measures) were extracted for each subject. In clinical practice, the prevalence of different dementia types is imbalanced, posing challenges for learning an effective classification model. Therefore, we propose the use of the RUSBoost algorithm in order to train classifiers and to handle the class imbalance training problem. Furthermore, a multi-class feature selection method based on sparsity is integrated into the proposed framework to improve the classification performance. It also provides a way for investigating the importance of different features and regions. Using a dataset of 500 subjects, the proposed framework achieved a high accuracy of 75.2% with a balanced accuracy of 69.3% for the five-class classification using ten-fold cross validation, which is significantly better than the results using support vector machine or random forest, demonstrating the feasibility of the proposed framework to support clinical decision making. Elsevier 2017-06-12 /pmc/articles/PMC5479966/ /pubmed/28664032 http://dx.doi.org/10.1016/j.nicl.2017.06.012 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Tong, Tong
Ledig, Christian
Guerrero, Ricardo
Schuh, Andreas
Koikkalainen, Juha
Tolonen, Antti
Rhodius, Hanneke
Barkhof, Frederik
Tijms, Betty
Lemstra, Afina W
Soininen, Hilkka
Remes, Anne M
Waldemar, Gunhild
Hasselbalch, Steen
Mecocci, Patrizia
Baroni, Marta
Lötjönen, Jyrki
Flier, Wiesje van der
Rueckert, Daniel
Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title_full Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title_fullStr Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title_full_unstemmed Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title_short Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
title_sort five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5479966/
https://www.ncbi.nlm.nih.gov/pubmed/28664032
http://dx.doi.org/10.1016/j.nicl.2017.06.012
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