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Good enough practices in scientific computing
Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with sof...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480810/ https://www.ncbi.nlm.nih.gov/pubmed/28640806 http://dx.doi.org/10.1371/journal.pcbi.1005510 |
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author | Wilson, Greg Bryan, Jennifer Cranston, Karen Kitzes, Justin Nederbragt, Lex Teal, Tracy K. |
author_facet | Wilson, Greg Bryan, Jennifer Cranston, Karen Kitzes, Justin Nederbragt, Lex Teal, Tracy K. |
author_sort | Wilson, Greg |
collection | PubMed |
description | Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with software and data. Computing workflows need to follow the same practices as lab projects and notebooks, with organized data, documented steps, and the project structured for reproducibility, but researchers new to computing often don't know where to start. This paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill. These practices, which encompass data management, programming, collaborating with colleagues, organizing projects, tracking work, and writing manuscripts, are drawn from a wide variety of published sources from our daily lives and from our work with volunteer organizations that have delivered workshops to over 11,000 people since 2010. |
format | Online Article Text |
id | pubmed-5480810 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54808102017-07-05 Good enough practices in scientific computing Wilson, Greg Bryan, Jennifer Cranston, Karen Kitzes, Justin Nederbragt, Lex Teal, Tracy K. PLoS Comput Biol Perspective Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with software and data. Computing workflows need to follow the same practices as lab projects and notebooks, with organized data, documented steps, and the project structured for reproducibility, but researchers new to computing often don't know where to start. This paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill. These practices, which encompass data management, programming, collaborating with colleagues, organizing projects, tracking work, and writing manuscripts, are drawn from a wide variety of published sources from our daily lives and from our work with volunteer organizations that have delivered workshops to over 11,000 people since 2010. Public Library of Science 2017-06-22 /pmc/articles/PMC5480810/ /pubmed/28640806 http://dx.doi.org/10.1371/journal.pcbi.1005510 Text en © 2017 Wilson et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Perspective Wilson, Greg Bryan, Jennifer Cranston, Karen Kitzes, Justin Nederbragt, Lex Teal, Tracy K. Good enough practices in scientific computing |
title | Good enough practices in scientific computing |
title_full | Good enough practices in scientific computing |
title_fullStr | Good enough practices in scientific computing |
title_full_unstemmed | Good enough practices in scientific computing |
title_short | Good enough practices in scientific computing |
title_sort | good enough practices in scientific computing |
topic | Perspective |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480810/ https://www.ncbi.nlm.nih.gov/pubmed/28640806 http://dx.doi.org/10.1371/journal.pcbi.1005510 |
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