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Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding tex...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481454/ https://www.ncbi.nlm.nih.gov/pubmed/28642480 http://dx.doi.org/10.1038/s41598-017-04151-4 |
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author | Brynolfsson, Patrik Nilsson, David Torheim, Turid Asklund, Thomas Karlsson, Camilla Thellenberg Trygg, Johan Nyholm, Tufve Garpebring, Anders |
author_facet | Brynolfsson, Patrik Nilsson, David Torheim, Turid Asklund, Thomas Karlsson, Camilla Thellenberg Trygg, Johan Nyholm, Tufve Garpebring, Anders |
author_sort | Brynolfsson, Patrik |
collection | PubMed |
description | In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding texture analysis workflow, or reporting of parameter settings crucial for replication of results. The aim of this study was to assess how sensitive Haralick texture features of apparent diffusion coefficient (ADC) MR images are to changes in five parameters related to image acquisition and pre-processing: noise, resolution, how the ADC map is constructed, the choice of quantization method, and the number of gray levels in the quantized image. We found that noise, resolution, choice of quantization method and the number of gray levels in the quantized images had a significant influence on most texture features, and that the effect size varied between different features. Different methods for constructing the ADC maps did not have an impact on any texture feature. Based on our results, we recommend using images with similar resolutions and noise levels, using one quantization method, and the same number of gray levels in all quantized images, to make meaningful comparisons of texture feature results between different subjects. |
format | Online Article Text |
id | pubmed-5481454 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54814542017-06-26 Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters Brynolfsson, Patrik Nilsson, David Torheim, Turid Asklund, Thomas Karlsson, Camilla Thellenberg Trygg, Johan Nyholm, Tufve Garpebring, Anders Sci Rep Article In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding texture analysis workflow, or reporting of parameter settings crucial for replication of results. The aim of this study was to assess how sensitive Haralick texture features of apparent diffusion coefficient (ADC) MR images are to changes in five parameters related to image acquisition and pre-processing: noise, resolution, how the ADC map is constructed, the choice of quantization method, and the number of gray levels in the quantized image. We found that noise, resolution, choice of quantization method and the number of gray levels in the quantized images had a significant influence on most texture features, and that the effect size varied between different features. Different methods for constructing the ADC maps did not have an impact on any texture feature. Based on our results, we recommend using images with similar resolutions and noise levels, using one quantization method, and the same number of gray levels in all quantized images, to make meaningful comparisons of texture feature results between different subjects. Nature Publishing Group UK 2017-06-22 /pmc/articles/PMC5481454/ /pubmed/28642480 http://dx.doi.org/10.1038/s41598-017-04151-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Brynolfsson, Patrik Nilsson, David Torheim, Turid Asklund, Thomas Karlsson, Camilla Thellenberg Trygg, Johan Nyholm, Tufve Garpebring, Anders Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title | Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title_full | Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title_fullStr | Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title_full_unstemmed | Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title_short | Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters |
title_sort | haralick texture features from apparent diffusion coefficient (adc) mri images depend on imaging and pre-processing parameters |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481454/ https://www.ncbi.nlm.nih.gov/pubmed/28642480 http://dx.doi.org/10.1038/s41598-017-04151-4 |
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