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Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters

In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding tex...

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Autores principales: Brynolfsson, Patrik, Nilsson, David, Torheim, Turid, Asklund, Thomas, Karlsson, Camilla Thellenberg, Trygg, Johan, Nyholm, Tufve, Garpebring, Anders
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481454/
https://www.ncbi.nlm.nih.gov/pubmed/28642480
http://dx.doi.org/10.1038/s41598-017-04151-4
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author Brynolfsson, Patrik
Nilsson, David
Torheim, Turid
Asklund, Thomas
Karlsson, Camilla Thellenberg
Trygg, Johan
Nyholm, Tufve
Garpebring, Anders
author_facet Brynolfsson, Patrik
Nilsson, David
Torheim, Turid
Asklund, Thomas
Karlsson, Camilla Thellenberg
Trygg, Johan
Nyholm, Tufve
Garpebring, Anders
author_sort Brynolfsson, Patrik
collection PubMed
description In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding texture analysis workflow, or reporting of parameter settings crucial for replication of results. The aim of this study was to assess how sensitive Haralick texture features of apparent diffusion coefficient (ADC) MR images are to changes in five parameters related to image acquisition and pre-processing: noise, resolution, how the ADC map is constructed, the choice of quantization method, and the number of gray levels in the quantized image. We found that noise, resolution, choice of quantization method and the number of gray levels in the quantized images had a significant influence on most texture features, and that the effect size varied between different features. Different methods for constructing the ADC maps did not have an impact on any texture feature. Based on our results, we recommend using images with similar resolutions and noise levels, using one quantization method, and the same number of gray levels in all quantized images, to make meaningful comparisons of texture feature results between different subjects.
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spelling pubmed-54814542017-06-26 Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters Brynolfsson, Patrik Nilsson, David Torheim, Turid Asklund, Thomas Karlsson, Camilla Thellenberg Trygg, Johan Nyholm, Tufve Garpebring, Anders Sci Rep Article In recent years, texture analysis of medical images has become increasingly popular in studies investigating diagnosis, classification and treatment response assessment of cancerous disease. Despite numerous applications in oncology and medical imaging in general, there is no consensus regarding texture analysis workflow, or reporting of parameter settings crucial for replication of results. The aim of this study was to assess how sensitive Haralick texture features of apparent diffusion coefficient (ADC) MR images are to changes in five parameters related to image acquisition and pre-processing: noise, resolution, how the ADC map is constructed, the choice of quantization method, and the number of gray levels in the quantized image. We found that noise, resolution, choice of quantization method and the number of gray levels in the quantized images had a significant influence on most texture features, and that the effect size varied between different features. Different methods for constructing the ADC maps did not have an impact on any texture feature. Based on our results, we recommend using images with similar resolutions and noise levels, using one quantization method, and the same number of gray levels in all quantized images, to make meaningful comparisons of texture feature results between different subjects. Nature Publishing Group UK 2017-06-22 /pmc/articles/PMC5481454/ /pubmed/28642480 http://dx.doi.org/10.1038/s41598-017-04151-4 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Brynolfsson, Patrik
Nilsson, David
Torheim, Turid
Asklund, Thomas
Karlsson, Camilla Thellenberg
Trygg, Johan
Nyholm, Tufve
Garpebring, Anders
Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title_full Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title_fullStr Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title_full_unstemmed Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title_short Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters
title_sort haralick texture features from apparent diffusion coefficient (adc) mri images depend on imaging and pre-processing parameters
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481454/
https://www.ncbi.nlm.nih.gov/pubmed/28642480
http://dx.doi.org/10.1038/s41598-017-04151-4
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