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Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks

[Image: see text] Living systems rely on complex networks of chemical reactions to control the concentrations of molecules in space and time. Despite the enormous complexity in biological networks, it is possible to identify network motifs that lead to functional outputs such as bistability or oscil...

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Autores principales: Wong, Albert S. Y., Pogodaev, Aleksandr A., Vialshin, Ilia N., Helwig, Britta, Huck, Wilhelm T. S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481813/
https://www.ncbi.nlm.nih.gov/pubmed/28582616
http://dx.doi.org/10.1021/jacs.7b00632
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author Wong, Albert S. Y.
Pogodaev, Aleksandr A.
Vialshin, Ilia N.
Helwig, Britta
Huck, Wilhelm T. S.
author_facet Wong, Albert S. Y.
Pogodaev, Aleksandr A.
Vialshin, Ilia N.
Helwig, Britta
Huck, Wilhelm T. S.
author_sort Wong, Albert S. Y.
collection PubMed
description [Image: see text] Living systems rely on complex networks of chemical reactions to control the concentrations of molecules in space and time. Despite the enormous complexity in biological networks, it is possible to identify network motifs that lead to functional outputs such as bistability or oscillations. One of the greatest challenges in chemistry is the creation of such functionality from chemical reactions. A key limitation is our lack of understanding of how molecular structure impacts on the dynamics of chemical reaction networks, preventing the design of networks that are robust (i.e., function in a large parameter space) and resilient (i.e., reach their out-of-equilibrium function rapidly). Here we demonstrate that reaction rates of individual reactions in the network can control the dynamics by which the system reaches limit cycle oscillations, thereby gaining information on the key parameters that govern the dynamics of these networks. We envision that these principles will be incorporated into the design of network motifs, enabling chemists to develop “molecular software” to create functional behavior in chemical systems.
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spelling pubmed-54818132017-06-24 Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks Wong, Albert S. Y. Pogodaev, Aleksandr A. Vialshin, Ilia N. Helwig, Britta Huck, Wilhelm T. S. J Am Chem Soc [Image: see text] Living systems rely on complex networks of chemical reactions to control the concentrations of molecules in space and time. Despite the enormous complexity in biological networks, it is possible to identify network motifs that lead to functional outputs such as bistability or oscillations. One of the greatest challenges in chemistry is the creation of such functionality from chemical reactions. A key limitation is our lack of understanding of how molecular structure impacts on the dynamics of chemical reaction networks, preventing the design of networks that are robust (i.e., function in a large parameter space) and resilient (i.e., reach their out-of-equilibrium function rapidly). Here we demonstrate that reaction rates of individual reactions in the network can control the dynamics by which the system reaches limit cycle oscillations, thereby gaining information on the key parameters that govern the dynamics of these networks. We envision that these principles will be incorporated into the design of network motifs, enabling chemists to develop “molecular software” to create functional behavior in chemical systems. American Chemical Society 2017-06-05 2017-06-21 /pmc/articles/PMC5481813/ /pubmed/28582616 http://dx.doi.org/10.1021/jacs.7b00632 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Wong, Albert S. Y.
Pogodaev, Aleksandr A.
Vialshin, Ilia N.
Helwig, Britta
Huck, Wilhelm T. S.
Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title_full Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title_fullStr Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title_full_unstemmed Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title_short Molecular Engineering of Robustness and Resilience in Enzymatic Reaction Networks
title_sort molecular engineering of robustness and resilience in enzymatic reaction networks
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481813/
https://www.ncbi.nlm.nih.gov/pubmed/28582616
http://dx.doi.org/10.1021/jacs.7b00632
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