Cargando…

A homology model of restriction endonuclease SfiI in complex with DNA

BACKGROUND: Restriction enzymes (REases) are commercial reagents commonly used in recombinant DNA technologies. They are attractive models for studying protein-DNA interactions and valuable targets for protein engineering. They are, however, extremely divergent: the amino acid sequence of a typical...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chmiel, Agnieszka A, Bujnicki, Janusz M, Skowronek, Krzysztof J
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC548270/ https://www.ncbi.nlm.nih.gov/pubmed/15667656 http://dx.doi.org/10.1186/1472-6807-5-2

Ejemplares similares

A Switch in the Mechanism of Communication between the Two DNA-Binding Sites in the SfiI Restriction Endonuclease
por: Bellamy, Stuart R.W., et al.
Publicado: (2007)

Differences between Ca(2+) and Mg(2+) in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping
por: Bellamy, Stuart R. W., et al.
Publicado: (2009)

Inference of relationships in the ‘twilight zone’ of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII
por: Pawlak, Sebastian D., et al.
Publicado: (2005)

Rational engineering of sequence specificity in R.MwoI restriction endonuclease
por: Skowronek, Krzysztof, et al.
Publicado: (2012)

Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI
por: Siwek, Wojciech, et al.
Publicado: (2012)

Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family
por: Zylicz-Stachula, Agnieszka, et al.
Publicado: (2009)

Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities
por: Zylicz-Stachula, Agnieszka, et al.
Publicado: (2012)

Structural model for the multisubunit Type IC restriction–modification DNA methyltransferase M.EcoR124I in complex with DNA
por: Obarska, Agnieszka, et al.
Publicado: (2006)

Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site
por: Kaminska, Katarzyna H, et al.
Publicado: (2008)

Dynamics and consequences of DNA looping by the FokI restriction endonuclease
por: Catto, Lucy E., et al.
Publicado: (2008)

Dynamics and consequences of DNA looping by the FokI restriction endonuclease
por: Catto, Lucy E., et al.
Publicado: (2008)

Protein assembly and DNA looping by the FokI restriction endonuclease
por: Catto, Lucy E., et al.
Publicado: (2006)

Cleavage of a model DNA replication fork by a Type I restriction endonuclease
por: Ishikawa, Ken, et al.
Publicado: (2009)

Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
por: Ibryashkina, Elena M, et al.
Publicado: (2007)

Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
por: Sanders, Kelly L., et al.
Publicado: (2009)

Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA
por: Tamulaitiene, Giedre, et al.
Publicado: (2017)

The dynamics of the monomeric restriction endonuclease BcnI during its interaction with DNA
por: Kostiuk, Georgij, et al.
Publicado: (2017)

Type I restriction endonucleases are true catalytic enzymes
por: Bianco, Piero R., et al.
Publicado: (2009)

Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger
por: Sulej, Agata A., et al.
Publicado: (2012)

smFRET Detection of Cis and Trans DNA Interactions by the BfiI Restriction Endonuclease
por: Ivanovaitė, Šaru̅nė, et al.
Publicado: (2023)

Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases
por: Borgaro, Janine G., et al.
Publicado: (2013)

Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri
por: Sun, Qiangzheng, et al.
Publicado: (2013)

Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex
por: Schnabl, Jakob, et al.
Publicado: (2021)

Human SFI1 and Centrin form a complex critical for centriole architecture and ciliogenesis
por: Laporte, Marine H, et al.
Publicado: (2022)

EXOG, a novel paralog of Endonuclease G in higher eukaryotes
por: Cymerman, Iwona A., et al.
Publicado: (2008)

HsdR Subunit of the Type I Restriction-Modification Enzyme EcoR124I: Biophysical Characterisation and Structural Modelling
por: Obarska-Kosinska, Agnieszka, et al.
Publicado: (2008)

Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5′-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi
por: Ishikawa, Ken, et al.
Publicado: (2005)

Increasing cleavage specificity and activity of restriction endonuclease KpnI
por: Vasu, Kommireddy, et al.
Publicado: (2013)

Complete Genome Sequence of SfII, a Serotype-Converting Bacteriophage of the Highly Prevalent Shigella flexneri Serotype 2a
por: George, Divya T., et al.
Publicado: (2013)

Selective Microbial Genomic DNA Isolation Using Restriction Endonucleases
por: Barnes, Helen E., et al.
Publicado: (2014)

Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII
por: Poleszak, Katarzyna, et al.
Publicado: (2012)

The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation
por: Batki, Julia, et al.
Publicado: (2019)

Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities
por: Chan, Siu-hong, et al.
Publicado: (2007)

Immediate loading on mandibular edentulous patient with SFI Bar® overdenture
por: Kim, Ha-Young, et al.
Publicado: (2011)

Licensing of Yeast Centrosome Duplication Requires Phosphoregulation of Sfi1
por: Avena, Jennifer S., et al.
Publicado: (2014)

Crystal structure of the ββα-Me type II restriction endonuclease Hpy99I with target DNA
por: Sokolowska, Monika, et al.
Publicado: (2009)

Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
por: Kurowski, Michal A, et al.
Publicado: (2003)

Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease
por: Marshall, Jacqueline J. T., et al.
Publicado: (2011)

Alteration of Sequence Specificity of the Type IIS Restriction Endonuclease BtsI
por: Guan, Shengxi, et al.
Publicado: (2010)

The Type II restriction endonuclease MvaI has dual specificity
por: Stier, Ildikó, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_mvchrhuut6a4i3nkhujide0ntv