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Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses

Fargesia Franchet emend. Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whe...

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Autores principales: Liu, Shiliang, Yang, Rongjie, Yang, Jun, Yi, Tongpei, Song, Huixing, Jiang, Mingyan, Tripathi, Durgesh K., Ma, Mingdong, Chen, Qibing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5482892/
https://www.ncbi.nlm.nih.gov/pubmed/28646152
http://dx.doi.org/10.1038/s41598-017-04613-9
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author Liu, Shiliang
Yang, Rongjie
Yang, Jun
Yi, Tongpei
Song, Huixing
Jiang, Mingyan
Tripathi, Durgesh K.
Ma, Mingdong
Chen, Qibing
author_facet Liu, Shiliang
Yang, Rongjie
Yang, Jun
Yi, Tongpei
Song, Huixing
Jiang, Mingyan
Tripathi, Durgesh K.
Ma, Mingdong
Chen, Qibing
author_sort Liu, Shiliang
collection PubMed
description Fargesia Franchet emend. Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus. The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences (P < 0.01) were observed in the reproductive structures between these two genera. The unrooted dendrogram, which was based on the SOM neural network, shows the same results as the cluster analysis of morphological characteristics. These data indicate that Fargesia is not a result of discontinuous sampling of Thamnocalamus; thus, Fargesia should not be treated as a synonym for Thamnocalamus.
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spelling pubmed-54828922017-06-26 Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses Liu, Shiliang Yang, Rongjie Yang, Jun Yi, Tongpei Song, Huixing Jiang, Mingyan Tripathi, Durgesh K. Ma, Mingdong Chen, Qibing Sci Rep Article Fargesia Franchet emend. Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus. The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences (P < 0.01) were observed in the reproductive structures between these two genera. The unrooted dendrogram, which was based on the SOM neural network, shows the same results as the cluster analysis of morphological characteristics. These data indicate that Fargesia is not a result of discontinuous sampling of Thamnocalamus; thus, Fargesia should not be treated as a synonym for Thamnocalamus. Nature Publishing Group UK 2017-06-23 /pmc/articles/PMC5482892/ /pubmed/28646152 http://dx.doi.org/10.1038/s41598-017-04613-9 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Shiliang
Yang, Rongjie
Yang, Jun
Yi, Tongpei
Song, Huixing
Jiang, Mingyan
Tripathi, Durgesh K.
Ma, Mingdong
Chen, Qibing
Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title_full Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title_fullStr Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title_full_unstemmed Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title_short Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
title_sort differentiating thamnocalamus munro from fargesia franchet emend. yi (bambusoideae, poaceae): novel evidence from morphological and neural-network analyses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5482892/
https://www.ncbi.nlm.nih.gov/pubmed/28646152
http://dx.doi.org/10.1038/s41598-017-04613-9
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