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Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies
ABSTRACT: The taxonomical classification among fungi kingdom in the last decades was evolved. In this work the targeted metabolomics study based on (1)H NMR spectroscopy combined with chemometrics tools was reported to be useful for differentiation of three model of fungal strains, which represent v...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5486612/ https://www.ncbi.nlm.nih.gov/pubmed/28585165 http://dx.doi.org/10.1007/s11274-017-2285-7 |
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author | Ząbek, Adam Klimek-Ochab, Magdalena Jawień, Ewa Młynarz, Piotr |
author_facet | Ząbek, Adam Klimek-Ochab, Magdalena Jawień, Ewa Młynarz, Piotr |
author_sort | Ząbek, Adam |
collection | PubMed |
description | ABSTRACT: The taxonomical classification among fungi kingdom in the last decades was evolved. In this work the targeted metabolomics study based on (1)H NMR spectroscopy combined with chemometrics tools was reported to be useful for differentiation of three model of fungal strains, which represent various genus of Ascomycota (Aspergillus pallidofulvus, Fusarium oxysporum, Geotrichum candidum) were selected in order to perform metabolomics studies. Each tested species, revealed specific metabolic profile of primary endo-metabolites. The species of A. pallidofulvus is represented by the highest concentration of glycerol, glucitol and Unk5. While, F. oxysporum species is characterised by increased level of propylene glycol, ethanol, 4-aminobutyrate, succinate, xylose, Unk1 and Unk4. In G. candidum, 3-methyl-2-oxovalerate, glutamate, pyruvate, glutamine and citrate were elevated. Additionally, a detailed analysis of metabolic changes among A. pallidofulvus, F. oxysporum and G. candidum showed that A. pallidofulvus seems to be the most pathogenic fungi. The obtained results demonstrated that targeted metabolomics analysis could be utilized in the future as a supporting taxonomical tool for currently methods. GRAPHICAL ABSTRACT: [Image: see text] |
format | Online Article Text |
id | pubmed-5486612 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-54866122017-07-24 Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies Ząbek, Adam Klimek-Ochab, Magdalena Jawień, Ewa Młynarz, Piotr World J Microbiol Biotechnol Original Paper ABSTRACT: The taxonomical classification among fungi kingdom in the last decades was evolved. In this work the targeted metabolomics study based on (1)H NMR spectroscopy combined with chemometrics tools was reported to be useful for differentiation of three model of fungal strains, which represent various genus of Ascomycota (Aspergillus pallidofulvus, Fusarium oxysporum, Geotrichum candidum) were selected in order to perform metabolomics studies. Each tested species, revealed specific metabolic profile of primary endo-metabolites. The species of A. pallidofulvus is represented by the highest concentration of glycerol, glucitol and Unk5. While, F. oxysporum species is characterised by increased level of propylene glycol, ethanol, 4-aminobutyrate, succinate, xylose, Unk1 and Unk4. In G. candidum, 3-methyl-2-oxovalerate, glutamate, pyruvate, glutamine and citrate were elevated. Additionally, a detailed analysis of metabolic changes among A. pallidofulvus, F. oxysporum and G. candidum showed that A. pallidofulvus seems to be the most pathogenic fungi. The obtained results demonstrated that targeted metabolomics analysis could be utilized in the future as a supporting taxonomical tool for currently methods. GRAPHICAL ABSTRACT: [Image: see text] Springer Netherlands 2017-06-05 2017 /pmc/articles/PMC5486612/ /pubmed/28585165 http://dx.doi.org/10.1007/s11274-017-2285-7 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Paper Ząbek, Adam Klimek-Ochab, Magdalena Jawień, Ewa Młynarz, Piotr Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title | Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title_full | Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title_fullStr | Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title_full_unstemmed | Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title_short | Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)H NMR-based studies |
title_sort | biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by (1)h nmr-based studies |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5486612/ https://www.ncbi.nlm.nih.gov/pubmed/28585165 http://dx.doi.org/10.1007/s11274-017-2285-7 |
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