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Training echo state networks for rotation-invariant bone marrow cell classification

The main principle of diagnostic pathology is the reliable interpretation of individual cells in context of the tissue architecture. Especially a confident examination of bone marrow specimen is dependent on a valid classification of myeloid cells. In this work, we propose a novel rotation-invariant...

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Autores principales: Kainz, Philipp, Burgsteiner, Harald, Asslaber, Martin, Ahammer, Helmut
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer London 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5486804/
https://www.ncbi.nlm.nih.gov/pubmed/28706349
http://dx.doi.org/10.1007/s00521-016-2609-9
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author Kainz, Philipp
Burgsteiner, Harald
Asslaber, Martin
Ahammer, Helmut
author_facet Kainz, Philipp
Burgsteiner, Harald
Asslaber, Martin
Ahammer, Helmut
author_sort Kainz, Philipp
collection PubMed
description The main principle of diagnostic pathology is the reliable interpretation of individual cells in context of the tissue architecture. Especially a confident examination of bone marrow specimen is dependent on a valid classification of myeloid cells. In this work, we propose a novel rotation-invariant learning scheme for multi-class echo state networks (ESNs), which achieves very high performance in automated bone marrow cell classification. Based on representing static images as temporal sequence of rotations, we show how ESNs robustly recognize cells of arbitrary rotations by taking advantage of their short-term memory capacity. The performance of our approach is compared to a classification random forest that learns rotation-invariance in a conventional way by exhaustively training on multiple rotations of individual samples. The methods were evaluated on a human bone marrow image database consisting of granulopoietic and erythropoietic cells in different maturation stages. Our ESN approach to cell classification does not rely on segmentation of cells or manual feature extraction and can therefore directly be applied to image data.
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spelling pubmed-54868042017-07-11 Training echo state networks for rotation-invariant bone marrow cell classification Kainz, Philipp Burgsteiner, Harald Asslaber, Martin Ahammer, Helmut Neural Comput Appl Engineering Applications of Neural Networks The main principle of diagnostic pathology is the reliable interpretation of individual cells in context of the tissue architecture. Especially a confident examination of bone marrow specimen is dependent on a valid classification of myeloid cells. In this work, we propose a novel rotation-invariant learning scheme for multi-class echo state networks (ESNs), which achieves very high performance in automated bone marrow cell classification. Based on representing static images as temporal sequence of rotations, we show how ESNs robustly recognize cells of arbitrary rotations by taking advantage of their short-term memory capacity. The performance of our approach is compared to a classification random forest that learns rotation-invariance in a conventional way by exhaustively training on multiple rotations of individual samples. The methods were evaluated on a human bone marrow image database consisting of granulopoietic and erythropoietic cells in different maturation stages. Our ESN approach to cell classification does not rely on segmentation of cells or manual feature extraction and can therefore directly be applied to image data. Springer London 2016-09-21 2017 /pmc/articles/PMC5486804/ /pubmed/28706349 http://dx.doi.org/10.1007/s00521-016-2609-9 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Engineering Applications of Neural Networks
Kainz, Philipp
Burgsteiner, Harald
Asslaber, Martin
Ahammer, Helmut
Training echo state networks for rotation-invariant bone marrow cell classification
title Training echo state networks for rotation-invariant bone marrow cell classification
title_full Training echo state networks for rotation-invariant bone marrow cell classification
title_fullStr Training echo state networks for rotation-invariant bone marrow cell classification
title_full_unstemmed Training echo state networks for rotation-invariant bone marrow cell classification
title_short Training echo state networks for rotation-invariant bone marrow cell classification
title_sort training echo state networks for rotation-invariant bone marrow cell classification
topic Engineering Applications of Neural Networks
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5486804/
https://www.ncbi.nlm.nih.gov/pubmed/28706349
http://dx.doi.org/10.1007/s00521-016-2609-9
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