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In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch

Diversification of raw material for biofuel production is of interest to both academia and industry. One attractive substrate is a renewable lignocellulosic material such as oil palm (Elaeis guineensis Jacq.) empty fruit bunch (OPEFB), which is a byproduct of the palm oil industry. This study aimed...

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Autores principales: Medina, Laura Marcela Palma, Ardila, Diana Catalina, Zambrano, María Mercedes, Restrepo, Silvia, Barrios, Andrés Fernando González
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5487248/
https://www.ncbi.nlm.nih.gov/pubmed/28702370
http://dx.doi.org/10.1016/j.btre.2017.06.003
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author Medina, Laura Marcela Palma
Ardila, Diana Catalina
Zambrano, María Mercedes
Restrepo, Silvia
Barrios, Andrés Fernando González
author_facet Medina, Laura Marcela Palma
Ardila, Diana Catalina
Zambrano, María Mercedes
Restrepo, Silvia
Barrios, Andrés Fernando González
author_sort Medina, Laura Marcela Palma
collection PubMed
description Diversification of raw material for biofuel production is of interest to both academia and industry. One attractive substrate is a renewable lignocellulosic material such as oil palm (Elaeis guineensis Jacq.) empty fruit bunch (OPEFB), which is a byproduct of the palm oil industry. This study aimed to characterize cellulases active against this substrate. Cellulases with activity against OPEFB were identified from a metagenomic library obtained from DNA extracted from a high-Andean forest ecosystem. Our findings show that the highest cellulolytic activities were obtained at pH and temperature ranges of 4–10 and 30 °C–60 °C, respectively. Due to the heterogeneous character of the system, degradation profiles were fitted to a fractal-like kinetic model, evidencing transport mass transfer limitations. The sequence analysis of the metagenomic library inserts revealed three glycosyl hydrolase families. Finally, molecular docking simulations of the cellulases were carried out corroborating possible exoglucanase and β-glucosidase activity.
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spelling pubmed-54872482017-07-12 In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch Medina, Laura Marcela Palma Ardila, Diana Catalina Zambrano, María Mercedes Restrepo, Silvia Barrios, Andrés Fernando González Biotechnol Rep (Amst) Article Diversification of raw material for biofuel production is of interest to both academia and industry. One attractive substrate is a renewable lignocellulosic material such as oil palm (Elaeis guineensis Jacq.) empty fruit bunch (OPEFB), which is a byproduct of the palm oil industry. This study aimed to characterize cellulases active against this substrate. Cellulases with activity against OPEFB were identified from a metagenomic library obtained from DNA extracted from a high-Andean forest ecosystem. Our findings show that the highest cellulolytic activities were obtained at pH and temperature ranges of 4–10 and 30 °C–60 °C, respectively. Due to the heterogeneous character of the system, degradation profiles were fitted to a fractal-like kinetic model, evidencing transport mass transfer limitations. The sequence analysis of the metagenomic library inserts revealed three glycosyl hydrolase families. Finally, molecular docking simulations of the cellulases were carried out corroborating possible exoglucanase and β-glucosidase activity. Elsevier 2017-06-10 /pmc/articles/PMC5487248/ /pubmed/28702370 http://dx.doi.org/10.1016/j.btre.2017.06.003 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Medina, Laura Marcela Palma
Ardila, Diana Catalina
Zambrano, María Mercedes
Restrepo, Silvia
Barrios, Andrés Fernando González
In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title_full In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title_fullStr In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title_full_unstemmed In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title_short In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
title_sort in vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5487248/
https://www.ncbi.nlm.nih.gov/pubmed/28702370
http://dx.doi.org/10.1016/j.btre.2017.06.003
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