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Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space

Catalytic promiscuity can facilitate evolution of enzyme functions—a multifunctional catalyst may act as a springboard for efficient functional adaptation. We test the effect of single mutations on multiple activities in two groups of promiscuous AP superfamily members to probe this hypothesis. We q...

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Autores principales: Bayer, Christopher D., van Loo, Bert, Hollfelder, Florian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5488252/
https://www.ncbi.nlm.nih.gov/pubmed/28464395
http://dx.doi.org/10.1002/cbic.201600657
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author Bayer, Christopher D.
van Loo, Bert
Hollfelder, Florian
author_facet Bayer, Christopher D.
van Loo, Bert
Hollfelder, Florian
author_sort Bayer, Christopher D.
collection PubMed
description Catalytic promiscuity can facilitate evolution of enzyme functions—a multifunctional catalyst may act as a springboard for efficient functional adaptation. We test the effect of single mutations on multiple activities in two groups of promiscuous AP superfamily members to probe this hypothesis. We quantify the effect of site‐saturating mutagenesis of an analogous, nucleophile‐flanking residue in two superfamily members: an arylsulfatase (AS) and a phosphonate monoester hydrolase (PMH). Statistical analysis suggests that no one physicochemical characteristic alone explains the mutational effects. Instead, these effects appear to be dominated by their structural context. Likewise, the effect of changing the catalytic nucleophile itself is not reaction‐type‐specific. Mapping of “fitness landscapes” of four activities onto the possible variation of a chosen sequence position revealed tremendous potential for respecialization of AP superfamily members through single‐point mutations, highlighting catalytic promiscuity as a powerful predictor of adaptive potential.
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spelling pubmed-54882522017-07-24 Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space Bayer, Christopher D. van Loo, Bert Hollfelder, Florian Chembiochem Full Papers Catalytic promiscuity can facilitate evolution of enzyme functions—a multifunctional catalyst may act as a springboard for efficient functional adaptation. We test the effect of single mutations on multiple activities in two groups of promiscuous AP superfamily members to probe this hypothesis. We quantify the effect of site‐saturating mutagenesis of an analogous, nucleophile‐flanking residue in two superfamily members: an arylsulfatase (AS) and a phosphonate monoester hydrolase (PMH). Statistical analysis suggests that no one physicochemical characteristic alone explains the mutational effects. Instead, these effects appear to be dominated by their structural context. Likewise, the effect of changing the catalytic nucleophile itself is not reaction‐type‐specific. Mapping of “fitness landscapes” of four activities onto the possible variation of a chosen sequence position revealed tremendous potential for respecialization of AP superfamily members through single‐point mutations, highlighting catalytic promiscuity as a powerful predictor of adaptive potential. John Wiley and Sons Inc. 2017-05-02 2017-06-01 /pmc/articles/PMC5488252/ /pubmed/28464395 http://dx.doi.org/10.1002/cbic.201600657 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Bayer, Christopher D.
van Loo, Bert
Hollfelder, Florian
Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title_full Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title_fullStr Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title_full_unstemmed Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title_short Specificity Effects of Amino Acid Substitutions in Promiscuous Hydrolases: Context‐Dependence of Catalytic Residue Contributions to Local Fitness Landscapes in Nearby Sequence Space
title_sort specificity effects of amino acid substitutions in promiscuous hydrolases: context‐dependence of catalytic residue contributions to local fitness landscapes in nearby sequence space
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5488252/
https://www.ncbi.nlm.nih.gov/pubmed/28464395
http://dx.doi.org/10.1002/cbic.201600657
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