Cargando…

Computational prediction of human metabolic pathways from the complete human genome

BACKGROUND: We present a computational pathway analysis of the human genome that assigns enzymes encoded therein to predicted metabolic pathways. Pathway assignments place genes in their larger biological context, and are a necessary first step toward quantitative modeling of metabolism. RESULTS: Ou...

Descripción completa

Detalles Bibliográficos
Autores principales:	Romero, Pedro, Wagg, Jonathan, Green, Michelle L, Kaiser, Dale, Krummenacker, Markus, Karp, Peter D
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC549063/ https://www.ncbi.nlm.nih.gov/pubmed/15642094 http://dx.doi.org/10.1186/gb-2004-6-1-r2

Ejemplares similares

Metabolic route computation in organism communities
por: Krummenacker, Markus, et al.
Publicado: (2019)

Construction and completion of flux balance models from pathway databases
por: Latendresse, Mario, et al.
Publicado: (2012)

Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc
por: Trupp, Miles, et al.
Publicado: (2010)

Pathway Tools Visualization of Organism-Scale Metabolic Networks
por: Paley, Suzanne, et al.
Publicado: (2021)

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation
por: Paley, Suzanne, et al.
Publicado: (2021)

Pathway Tools Management of Pathway/Genome Data for Microbial Communities
por: Karp, Peter D., et al.
Publicado: (2022)

Computing minimal nutrient sets from metabolic networks via linear constraint solving
por: Eker, Steven, et al.
Publicado: (2013)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2010)

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
por: Caspi, Ron, et al.
Publicado: (2008)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2016)

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
por: Green, Michelle L, et al.
Publicado: (2004)

The MetaCyc database of metabolic pathways and enzymes - a 2019 update
por: Caspi, Ron, et al.
Publicado: (2020)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2012)

Computational Metabolomics Operations at BioCyc.org
por: Karp, Peter D., et al.
Publicado: (2015)

Machine learning methods for metabolic pathway prediction
por: Dale, Joseph M, et al.
Publicado: (2010)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
por: Caspi, Ron, et al.
Publicado: (2014)

The MetaCyc database of metabolic pathways and enzymes
por: Caspi, Ron, et al.
Publicado: (2018)

MetaCyc: a multiorganism database of metabolic pathways and enzymes
por: Caspi, Ron, et al.
Publicado: (2006)

The outcomes of pathway database computations depend on pathway ontology
por: Green, M. L., et al.
Publicado: (2006)

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
por: Feist, Adam M, et al.
Publicado: (2007)

A Comparison of Microbial Genome Web Portals
por: Karp, Peter D., et al.
Publicado: (2019)

Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests
por: Shi, Jing, et al.
Publicado: (2006)

New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features
por: Tapparel, Caroline, et al.
Publicado: (2007)

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
por: Green, M. L., et al.
Publicado: (2005)

Metabolite Patterns in Human Myeloid Hematopoiesis Result from Lineage-Dependent Active Metabolic Pathways
por: Kaiser, Lars, et al.
Publicado: (2020)

Complete Genome Sequence of GII.4 Human Norovirus HS191
por: Sosnovtsev, Stanislav V., et al.
Publicado: (2013)

Many Genbank Entries for Complete Microbial Genomes Violate the Genbank Standard
por: Karp, Peter D.
Publicado: (2001)

The complete sequence of a human genome*
por: Nurk, Sergey, et al.
Publicado: (2022)

Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale
por: Shmelkov, Evgeny, et al.
Publicado: (2011)

Human interaction with computers
por: Green, Thomas R G, et al.
Publicado: (1980)

Analysis of the complete genome sequences of human rhinovirus
Publicado: (2010)

Implications of the first complete human genome assembly
Publicado: (2022)

DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases
por: Ulitsky, Igor, et al.
Publicado: (2010)

Short arms of human acrocentric chromosomes and the completion of the human genome sequence
por: Antonarakis, Stylianos E.
Publicado: (2022)

A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs
por: Dingerdissen, Hayley, et al.
Publicado: (2014)

Computational prediction of human deep intronic variation
por: Barbosa, Pedro, et al.
Publicado: (2023)

The Complete Sequence of a Human Parainfluenzavirus 4 Genome
por: Yea, Carmen, et al.
Publicado: (2009)

Complete genome sequence of human astrovirus genotype 6
por: Guo, Li, et al.
Publicado: (2010)

Frequency and Pattern of Heteroplasmy in the Complete Human Mitochondrial Genome
por: Ramos, Amanda, et al.
Publicado: (2013)

Update on human genome completion and annotations: Gene nomenclature
por: Nebert, Daniel W, et al.
Publicado: (2003)

Cannot write session to /tmp/vufind_sessions/sess_q6rc3alr5l7cfn68lhrduthdaf