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Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine

α-Ketoisocaproate (KIC) is used widely in the pharmaceutical and nutraceutical industries. In previous studies, we achieved a one-step biosynthesis of KIC from l-leucine, using an Escherichia coli whole-cell biocatalyst expressing an l-amino acid deaminase (l-AAD) from Proteus vulgaris. Herein, we r...

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Autores principales: Song, Yang, Li, Jianghua, Shin, Hyun-dong, Liu, Long, Du, Guocheng, Chen, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5491005/
https://www.ncbi.nlm.nih.gov/pubmed/28662040
http://dx.doi.org/10.1371/journal.pone.0179229
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author Song, Yang
Li, Jianghua
Shin, Hyun-dong
Liu, Long
Du, Guocheng
Chen, Jian
author_facet Song, Yang
Li, Jianghua
Shin, Hyun-dong
Liu, Long
Du, Guocheng
Chen, Jian
author_sort Song, Yang
collection PubMed
description α-Ketoisocaproate (KIC) is used widely in the pharmaceutical and nutraceutical industries. In previous studies, we achieved a one-step biosynthesis of KIC from l-leucine, using an Escherichia coli whole-cell biocatalyst expressing an l-amino acid deaminase (l-AAD) from Proteus vulgaris. Herein, we report the fine-tuning of l-AAD gene expression in E. coli BL21 (DE3) at the transcriptional and translational levels to improve the KIC titer. By optimizing the plasmid origin with different copy numbers, modulating messenger RNA structure downstream of the initiation codon, and designing the sequences at the ribosome binding site, we increased biocatalyst activity to 31.77%, 24.89%, and 30.20%, respectively, above that achieved with BL21/pet28a-lad. The highest KIC titers reached 76.47 g·L(-1), 80.29 g·L(-1), and 81.41 g·L(-1), respectively. Additionally, the integration of these three engineering strategies achieved an even higher KIC production of 86.55 g·L(-1) and a higher l-leucine conversion rate of 94.25%. The enzyme-engineering strategies proposed herein may be generally applicable to the construction of other biocatalysts.
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spelling pubmed-54910052017-07-18 Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine Song, Yang Li, Jianghua Shin, Hyun-dong Liu, Long Du, Guocheng Chen, Jian PLoS One Research Article α-Ketoisocaproate (KIC) is used widely in the pharmaceutical and nutraceutical industries. In previous studies, we achieved a one-step biosynthesis of KIC from l-leucine, using an Escherichia coli whole-cell biocatalyst expressing an l-amino acid deaminase (l-AAD) from Proteus vulgaris. Herein, we report the fine-tuning of l-AAD gene expression in E. coli BL21 (DE3) at the transcriptional and translational levels to improve the KIC titer. By optimizing the plasmid origin with different copy numbers, modulating messenger RNA structure downstream of the initiation codon, and designing the sequences at the ribosome binding site, we increased biocatalyst activity to 31.77%, 24.89%, and 30.20%, respectively, above that achieved with BL21/pet28a-lad. The highest KIC titers reached 76.47 g·L(-1), 80.29 g·L(-1), and 81.41 g·L(-1), respectively. Additionally, the integration of these three engineering strategies achieved an even higher KIC production of 86.55 g·L(-1) and a higher l-leucine conversion rate of 94.25%. The enzyme-engineering strategies proposed herein may be generally applicable to the construction of other biocatalysts. Public Library of Science 2017-06-29 /pmc/articles/PMC5491005/ /pubmed/28662040 http://dx.doi.org/10.1371/journal.pone.0179229 Text en © 2017 Song et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Song, Yang
Li, Jianghua
Shin, Hyun-dong
Liu, Long
Du, Guocheng
Chen, Jian
Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title_full Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title_fullStr Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title_full_unstemmed Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title_short Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
title_sort tuning the transcription and translation of l-amino acid deaminase in escherichia coli improves α-ketoisocaproate production from l-leucine
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5491005/
https://www.ncbi.nlm.nih.gov/pubmed/28662040
http://dx.doi.org/10.1371/journal.pone.0179229
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