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Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits
Using species distribution models and information on genetic structure and within-population variance observed in a series of common garden trials, we reconstructed a historical biogeography of trembling aspen in North America. We used an ensemble classifier modelling approach (RandomForest) to reco...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498503/ https://www.ncbi.nlm.nih.gov/pubmed/28680120 http://dx.doi.org/10.1038/s41598-017-04871-7 |
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author | Ding, Chen Schreiber, Stefan G. Roberts, David R. Hamann, Andreas Brouard, Jean S. |
author_facet | Ding, Chen Schreiber, Stefan G. Roberts, David R. Hamann, Andreas Brouard, Jean S. |
author_sort | Ding, Chen |
collection | PubMed |
description | Using species distribution models and information on genetic structure and within-population variance observed in a series of common garden trials, we reconstructed a historical biogeography of trembling aspen in North America. We used an ensemble classifier modelling approach (RandomForest) to reconstruct palaeoclimatic habitat for the periods 21,000, 14,000, 11,000 and 6,000 years before present. Genetic structure and diversity in quantitative traits was evaluated in common garden trials with 43 aspen collections ranging from Minnesota to northern British Columbia. Our main goals were to examine potential recolonisation routes for aspen from southwestern, eastern and Beringian glacial refugia. We further examined if any refugium had stable habitat conditions where aspen clones may have survived multiple glaciations. Our palaeoclimatic habitat reconstructions indicate that aspen may have recolonised boreal Canada and Alaska from refugia in the eastern United States, with separate southwestern refugia for the Rocky Mountain regions. This is further supported by a southeast to northwest gradient of decreasing genetic variance in quantitative traits, a likely result of repeated founder effects. Stable habitat where aspen clones may have survived multiple glaciations was predicted in Mexico and the eastern United States, but not in the west where some of the largest aspen clones have been documented. |
format | Online Article Text |
id | pubmed-5498503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54985032017-07-10 Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits Ding, Chen Schreiber, Stefan G. Roberts, David R. Hamann, Andreas Brouard, Jean S. Sci Rep Article Using species distribution models and information on genetic structure and within-population variance observed in a series of common garden trials, we reconstructed a historical biogeography of trembling aspen in North America. We used an ensemble classifier modelling approach (RandomForest) to reconstruct palaeoclimatic habitat for the periods 21,000, 14,000, 11,000 and 6,000 years before present. Genetic structure and diversity in quantitative traits was evaluated in common garden trials with 43 aspen collections ranging from Minnesota to northern British Columbia. Our main goals were to examine potential recolonisation routes for aspen from southwestern, eastern and Beringian glacial refugia. We further examined if any refugium had stable habitat conditions where aspen clones may have survived multiple glaciations. Our palaeoclimatic habitat reconstructions indicate that aspen may have recolonised boreal Canada and Alaska from refugia in the eastern United States, with separate southwestern refugia for the Rocky Mountain regions. This is further supported by a southeast to northwest gradient of decreasing genetic variance in quantitative traits, a likely result of repeated founder effects. Stable habitat where aspen clones may have survived multiple glaciations was predicted in Mexico and the eastern United States, but not in the west where some of the largest aspen clones have been documented. Nature Publishing Group UK 2017-07-05 /pmc/articles/PMC5498503/ /pubmed/28680120 http://dx.doi.org/10.1038/s41598-017-04871-7 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ding, Chen Schreiber, Stefan G. Roberts, David R. Hamann, Andreas Brouard, Jean S. Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title | Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title_full | Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title_fullStr | Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title_full_unstemmed | Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title_short | Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
title_sort | post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498503/ https://www.ncbi.nlm.nih.gov/pubmed/28680120 http://dx.doi.org/10.1038/s41598-017-04871-7 |
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