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Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China

In this study, a novel 27-locus system (now known as the SureID PanGlobal system), including 24 autosomal STRs (D3S1358, TH01, D21S11, D18S51, Penta E, D12S391, D6S1043, D2S1338, D1S1656, D2S441, D5S818, D13S317, D7S820, D19S433, CSF1PO, Penta D, vWA, D8S1179, TPOX, FGA, D16S539, D22S1045, SE33, D10...

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Autores principales: Liu, Yaju, Guo, Lihong, Jin, Haiying, Li, Zheng, Bai, Rufeng, Shi, Meisen, Ma, Shuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498568/
https://www.ncbi.nlm.nih.gov/pubmed/28680088
http://dx.doi.org/10.1038/s41598-017-04548-1
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author Liu, Yaju
Guo, Lihong
Jin, Haiying
Li, Zheng
Bai, Rufeng
Shi, Meisen
Ma, Shuhua
author_facet Liu, Yaju
Guo, Lihong
Jin, Haiying
Li, Zheng
Bai, Rufeng
Shi, Meisen
Ma, Shuhua
author_sort Liu, Yaju
collection PubMed
description In this study, a novel 27-locus system (now known as the SureID PanGlobal system), including 24 autosomal STRs (D3S1358, TH01, D21S11, D18S51, Penta E, D12S391, D6S1043, D2S1338, D1S1656, D2S441, D5S818, D13S317, D7S820, D19S433, CSF1PO, Penta D, vWA, D8S1179, TPOX, FGA, D16S539, D22S1045, SE33, D10S1248), two Y-chromosome markers (DYS391 and Y-indel) and the sex determining marker, Amelogenin was developed with six fluorescent dyes labeling. The included STR loci belonged to the core loci in the Combined DNA Index System (CODIS) and the European Standard Set (ESS) as well as some additional loci commonly used in commercial kits and national DNA databases. This paper describes the validation studies conducted with the SureID PanGlobal system using Applied Biosystems 3500 XL Genetic Analyzer for fragment length detection that included the analysis of the following parameters and aspects: PCR conditions, sensitivity, species specificity, inhibition, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated that the SureID PanGlobal system is reproducible, accurate, sensitive and robust for forensic application and databasing. Additionally, the whole cycling time of the system can finish within 65 minutes, which was developed specifically for rapid and reliable generation of DNA profiles obtained from blood, buccal swabs and forensic stains.
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spelling pubmed-54985682017-07-10 Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China Liu, Yaju Guo, Lihong Jin, Haiying Li, Zheng Bai, Rufeng Shi, Meisen Ma, Shuhua Sci Rep Article In this study, a novel 27-locus system (now known as the SureID PanGlobal system), including 24 autosomal STRs (D3S1358, TH01, D21S11, D18S51, Penta E, D12S391, D6S1043, D2S1338, D1S1656, D2S441, D5S818, D13S317, D7S820, D19S433, CSF1PO, Penta D, vWA, D8S1179, TPOX, FGA, D16S539, D22S1045, SE33, D10S1248), two Y-chromosome markers (DYS391 and Y-indel) and the sex determining marker, Amelogenin was developed with six fluorescent dyes labeling. The included STR loci belonged to the core loci in the Combined DNA Index System (CODIS) and the European Standard Set (ESS) as well as some additional loci commonly used in commercial kits and national DNA databases. This paper describes the validation studies conducted with the SureID PanGlobal system using Applied Biosystems 3500 XL Genetic Analyzer for fragment length detection that included the analysis of the following parameters and aspects: PCR conditions, sensitivity, species specificity, inhibition, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated that the SureID PanGlobal system is reproducible, accurate, sensitive and robust for forensic application and databasing. Additionally, the whole cycling time of the system can finish within 65 minutes, which was developed specifically for rapid and reliable generation of DNA profiles obtained from blood, buccal swabs and forensic stains. Nature Publishing Group UK 2017-07-05 /pmc/articles/PMC5498568/ /pubmed/28680088 http://dx.doi.org/10.1038/s41598-017-04548-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Yaju
Guo, Lihong
Jin, Haiying
Li, Zheng
Bai, Rufeng
Shi, Meisen
Ma, Shuhua
Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title_full Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title_fullStr Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title_full_unstemmed Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title_short Developmental validation of a 6-dye typing system with 27 loci and application in Han population of China
title_sort developmental validation of a 6-dye typing system with 27 loci and application in han population of china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498568/
https://www.ncbi.nlm.nih.gov/pubmed/28680088
http://dx.doi.org/10.1038/s41598-017-04548-1
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