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Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source
Single-particle diffraction from X-ray Free Electron Lasers offers the potential for molecular structure determination without the need for crystallization. In an effort to further develop the technique, we present a dataset of coherent soft X-ray diffraction images of Coliphage PR772 virus, collect...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501160/ https://www.ncbi.nlm.nih.gov/pubmed/28654088 http://dx.doi.org/10.1038/sdata.2017.79 |
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author | Reddy, Hemanth K.N. Yoon, Chun Hong Aquila, Andrew Awel, Salah Ayyer, Kartik Barty, Anton Berntsen, Peter Bielecki, Johan Bobkov, Sergey Bucher, Maximilian Carini, Gabriella A. Carron, Sebastian Chapman, Henry Daurer, Benedikt DeMirci, Hasan Ekeberg, Tomas Fromme, Petra Hajdu, Janos Hanke, Max Felix Hart, Philip Hogue, Brenda G. Hosseinizadeh, Ahmad Kim, Yoonhee Kirian, Richard A. Kurta, Ruslan P. Larsson, Daniel S.D. Duane Loh, N. Maia, Filipe R.N.C. Mancuso, Adrian P. Mühlig, Kerstin Munke, Anna Nam, Daewoong Nettelblad, Carl Ourmazd, Abbas Rose, Max Schwander, Peter Seibert, Marvin Sellberg, Jonas A. Song, Changyong Spence, John C.H. Svenda, Martin Van der Schot, Gijs Vartanyants, Ivan A. Williams, Garth J. Xavier, P. Lourdu |
author_facet | Reddy, Hemanth K.N. Yoon, Chun Hong Aquila, Andrew Awel, Salah Ayyer, Kartik Barty, Anton Berntsen, Peter Bielecki, Johan Bobkov, Sergey Bucher, Maximilian Carini, Gabriella A. Carron, Sebastian Chapman, Henry Daurer, Benedikt DeMirci, Hasan Ekeberg, Tomas Fromme, Petra Hajdu, Janos Hanke, Max Felix Hart, Philip Hogue, Brenda G. Hosseinizadeh, Ahmad Kim, Yoonhee Kirian, Richard A. Kurta, Ruslan P. Larsson, Daniel S.D. Duane Loh, N. Maia, Filipe R.N.C. Mancuso, Adrian P. Mühlig, Kerstin Munke, Anna Nam, Daewoong Nettelblad, Carl Ourmazd, Abbas Rose, Max Schwander, Peter Seibert, Marvin Sellberg, Jonas A. Song, Changyong Spence, John C.H. Svenda, Martin Van der Schot, Gijs Vartanyants, Ivan A. Williams, Garth J. Xavier, P. Lourdu |
author_sort | Reddy, Hemanth K.N. |
collection | PubMed |
description | Single-particle diffraction from X-ray Free Electron Lasers offers the potential for molecular structure determination without the need for crystallization. In an effort to further develop the technique, we present a dataset of coherent soft X-ray diffraction images of Coliphage PR772 virus, collected at the Atomic Molecular Optics (AMO) beamline with pnCCD detectors in the LAMP instrument at the Linac Coherent Light Source. The diameter of PR772 ranges from 65–70 nm, which is considerably smaller than the previously reported ~600 nm diameter Mimivirus. This reflects continued progress in XFEL-based single-particle imaging towards the single molecular imaging regime. The data set contains significantly more single particle hits than collected in previous experiments, enabling the development of improved statistical analysis, reconstruction algorithms, and quantitative metrics to determine resolution and self-consistency. |
format | Online Article Text |
id | pubmed-5501160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-55011602017-07-12 Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source Reddy, Hemanth K.N. Yoon, Chun Hong Aquila, Andrew Awel, Salah Ayyer, Kartik Barty, Anton Berntsen, Peter Bielecki, Johan Bobkov, Sergey Bucher, Maximilian Carini, Gabriella A. Carron, Sebastian Chapman, Henry Daurer, Benedikt DeMirci, Hasan Ekeberg, Tomas Fromme, Petra Hajdu, Janos Hanke, Max Felix Hart, Philip Hogue, Brenda G. Hosseinizadeh, Ahmad Kim, Yoonhee Kirian, Richard A. Kurta, Ruslan P. Larsson, Daniel S.D. Duane Loh, N. Maia, Filipe R.N.C. Mancuso, Adrian P. Mühlig, Kerstin Munke, Anna Nam, Daewoong Nettelblad, Carl Ourmazd, Abbas Rose, Max Schwander, Peter Seibert, Marvin Sellberg, Jonas A. Song, Changyong Spence, John C.H. Svenda, Martin Van der Schot, Gijs Vartanyants, Ivan A. Williams, Garth J. Xavier, P. Lourdu Sci Data Data Descriptor Single-particle diffraction from X-ray Free Electron Lasers offers the potential for molecular structure determination without the need for crystallization. In an effort to further develop the technique, we present a dataset of coherent soft X-ray diffraction images of Coliphage PR772 virus, collected at the Atomic Molecular Optics (AMO) beamline with pnCCD detectors in the LAMP instrument at the Linac Coherent Light Source. The diameter of PR772 ranges from 65–70 nm, which is considerably smaller than the previously reported ~600 nm diameter Mimivirus. This reflects continued progress in XFEL-based single-particle imaging towards the single molecular imaging regime. The data set contains significantly more single particle hits than collected in previous experiments, enabling the development of improved statistical analysis, reconstruction algorithms, and quantitative metrics to determine resolution and self-consistency. Nature Publishing Group 2017-06-27 /pmc/articles/PMC5501160/ /pubmed/28654088 http://dx.doi.org/10.1038/sdata.2017.79 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
spellingShingle | Data Descriptor Reddy, Hemanth K.N. Yoon, Chun Hong Aquila, Andrew Awel, Salah Ayyer, Kartik Barty, Anton Berntsen, Peter Bielecki, Johan Bobkov, Sergey Bucher, Maximilian Carini, Gabriella A. Carron, Sebastian Chapman, Henry Daurer, Benedikt DeMirci, Hasan Ekeberg, Tomas Fromme, Petra Hajdu, Janos Hanke, Max Felix Hart, Philip Hogue, Brenda G. Hosseinizadeh, Ahmad Kim, Yoonhee Kirian, Richard A. Kurta, Ruslan P. Larsson, Daniel S.D. Duane Loh, N. Maia, Filipe R.N.C. Mancuso, Adrian P. Mühlig, Kerstin Munke, Anna Nam, Daewoong Nettelblad, Carl Ourmazd, Abbas Rose, Max Schwander, Peter Seibert, Marvin Sellberg, Jonas A. Song, Changyong Spence, John C.H. Svenda, Martin Van der Schot, Gijs Vartanyants, Ivan A. Williams, Garth J. Xavier, P. Lourdu Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title | Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title_full | Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title_fullStr | Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title_full_unstemmed | Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title_short | Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source |
title_sort | coherent soft x-ray diffraction imaging of coliphage pr772 at the linac coherent light source |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501160/ https://www.ncbi.nlm.nih.gov/pubmed/28654088 http://dx.doi.org/10.1038/sdata.2017.79 |
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