Cargando…

The effects of sampling on the efficiency and accuracy of k−mer indexes: Theoretical and empirical comparisons using the human genome

One of the most common ways to search a sequence database for sequences that are similar to a query sequence is to use a k-mer index such as BLAST. A big problem with k-mer indexes is the space required to store the lists of all occurrences of all k-mers in the database. One method for reducing the...

Descripción completa

Detalles Bibliográficos
Autores principales: Almutairy, Meznah, Torng, Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501444/
https://www.ncbi.nlm.nih.gov/pubmed/28686614
http://dx.doi.org/10.1371/journal.pone.0179046

Ejemplares similares