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Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction
NMR spectroscopy is central to atomic resolution studies in biology and chemistry. Key to this approach are multidimensional experiments. Obtaining such experiments with sufficient resolution, however, is a slow process, in part since each time increment in every indirect dimension needs to be recor...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5504140/ https://www.ncbi.nlm.nih.gov/pubmed/27650957 http://dx.doi.org/10.1007/s10858-016-0062-9 |
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author | Bostock, M. J. Holland, D. J. Nietlispach, D. |
author_facet | Bostock, M. J. Holland, D. J. Nietlispach, D. |
author_sort | Bostock, M. J. |
collection | PubMed |
description | NMR spectroscopy is central to atomic resolution studies in biology and chemistry. Key to this approach are multidimensional experiments. Obtaining such experiments with sufficient resolution, however, is a slow process, in part since each time increment in every indirect dimension needs to be recorded twice, in quadrature. We introduce a modified compressed sensing (CS) algorithm enabling reconstruction of data acquired with random acquisition of quadrature components in gradient-selection NMR. We name this approach random quadrature detection (RQD). Gradient-selection experiments are essential to the success of modern NMR and with RQD, a 50 % reduction in the number of data points per indirect dimension is possible, by only acquiring one quadrature component per time point. Using our algorithm (CS(RQD)), high quality reconstructions are achieved. RQD is modular and combined with non-uniform sampling we show that this provides increased flexibility in designing sampling schedules leading to improved resolution with increasing benefits as dimensionality of experiments increases, with particular advantages for 4- and higher dimensional experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-016-0062-9) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5504140 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-55041402017-07-25 Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction Bostock, M. J. Holland, D. J. Nietlispach, D. J Biomol NMR Article NMR spectroscopy is central to atomic resolution studies in biology and chemistry. Key to this approach are multidimensional experiments. Obtaining such experiments with sufficient resolution, however, is a slow process, in part since each time increment in every indirect dimension needs to be recorded twice, in quadrature. We introduce a modified compressed sensing (CS) algorithm enabling reconstruction of data acquired with random acquisition of quadrature components in gradient-selection NMR. We name this approach random quadrature detection (RQD). Gradient-selection experiments are essential to the success of modern NMR and with RQD, a 50 % reduction in the number of data points per indirect dimension is possible, by only acquiring one quadrature component per time point. Using our algorithm (CS(RQD)), high quality reconstructions are achieved. RQD is modular and combined with non-uniform sampling we show that this provides increased flexibility in designing sampling schedules leading to improved resolution with increasing benefits as dimensionality of experiments increases, with particular advantages for 4- and higher dimensional experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-016-0062-9) contains supplementary material, which is available to authorized users. Springer Netherlands 2016-09-20 2017 /pmc/articles/PMC5504140/ /pubmed/27650957 http://dx.doi.org/10.1007/s10858-016-0062-9 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Bostock, M. J. Holland, D. J. Nietlispach, D. Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title | Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title_full | Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title_fullStr | Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title_full_unstemmed | Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title_short | Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction |
title_sort | improving resolution in multidimensional nmr using random quadrature detection with compressed sensing reconstruction |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5504140/ https://www.ncbi.nlm.nih.gov/pubmed/27650957 http://dx.doi.org/10.1007/s10858-016-0062-9 |
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