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Rapid cadmium SAD phasing at the standard wavelength (1 Å)
Cadmium ions can be effectively used to promote crystal growth and for experimental phasing. Here, the use of cadmium ions as a suitable anomalous scatterer at the standard wavelength of 1 Å is demonstrated. The structures of three different proteins were determined using cadmium single-wavelength a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5505155/ https://www.ncbi.nlm.nih.gov/pubmed/28695858 http://dx.doi.org/10.1107/S2059798317006970 |
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author | Panneerselvam, Saravanan Kumpula, Esa-Pekka Kursula, Inari Burkhardt, Anja Meents, Alke |
author_facet | Panneerselvam, Saravanan Kumpula, Esa-Pekka Kursula, Inari Burkhardt, Anja Meents, Alke |
author_sort | Panneerselvam, Saravanan |
collection | PubMed |
description | Cadmium ions can be effectively used to promote crystal growth and for experimental phasing. Here, the use of cadmium ions as a suitable anomalous scatterer at the standard wavelength of 1 Å is demonstrated. The structures of three different proteins were determined using cadmium single-wavelength anomalous dispersion (SAD) phasing. Owing to the strong anomalous signal, the structure of lysozyme could be automatically phased and built using a very low anomalous multiplicity (1.1) and low-completeness (77%) data set. Additionally, it is shown that cadmium ions can easily substitute divalent ions in ATP–divalent cation complexes. This property could be generally applied for phasing experiments of a wide range of nucleotide-binding proteins. Improvements in crystal growth and quality, good anomalous signal at standard wavelengths (i.e. no need to change photon energy) and rapid phasing and refinement using a single data set are benefits that should allow cadmium ions to be widely used for experimental phasing. |
format | Online Article Text |
id | pubmed-5505155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-55051552017-07-25 Rapid cadmium SAD phasing at the standard wavelength (1 Å) Panneerselvam, Saravanan Kumpula, Esa-Pekka Kursula, Inari Burkhardt, Anja Meents, Alke Acta Crystallogr D Struct Biol Research Papers Cadmium ions can be effectively used to promote crystal growth and for experimental phasing. Here, the use of cadmium ions as a suitable anomalous scatterer at the standard wavelength of 1 Å is demonstrated. The structures of three different proteins were determined using cadmium single-wavelength anomalous dispersion (SAD) phasing. Owing to the strong anomalous signal, the structure of lysozyme could be automatically phased and built using a very low anomalous multiplicity (1.1) and low-completeness (77%) data set. Additionally, it is shown that cadmium ions can easily substitute divalent ions in ATP–divalent cation complexes. This property could be generally applied for phasing experiments of a wide range of nucleotide-binding proteins. Improvements in crystal growth and quality, good anomalous signal at standard wavelengths (i.e. no need to change photon energy) and rapid phasing and refinement using a single data set are benefits that should allow cadmium ions to be widely used for experimental phasing. International Union of Crystallography 2017-06-30 /pmc/articles/PMC5505155/ /pubmed/28695858 http://dx.doi.org/10.1107/S2059798317006970 Text en © Panneerselvam et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Panneerselvam, Saravanan Kumpula, Esa-Pekka Kursula, Inari Burkhardt, Anja Meents, Alke Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title | Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title_full | Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title_fullStr | Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title_full_unstemmed | Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title_short | Rapid cadmium SAD phasing at the standard wavelength (1 Å) |
title_sort | rapid cadmium sad phasing at the standard wavelength (1 å) |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5505155/ https://www.ncbi.nlm.nih.gov/pubmed/28695858 http://dx.doi.org/10.1107/S2059798317006970 |
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