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290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
The Tara Oceans Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in the Mediterranean Sea, we have used current assembly and binning techniques to reconstruct 290 puta...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507172/ https://www.ncbi.nlm.nih.gov/pubmed/28713657 http://dx.doi.org/10.7717/peerj.3558 |
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author | Tully, Benjamin J. Sachdeva, Rohan Graham, Elaina D. Heidelberg, John F. |
author_facet | Tully, Benjamin J. Sachdeva, Rohan Graham, Elaina D. Heidelberg, John F. |
author_sort | Tully, Benjamin J. |
collection | PubMed |
description | The Tara Oceans Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in the Mediterranean Sea, we have used current assembly and binning techniques to reconstruct 290 putative draft metagenome-assembled bacterial and archaeal genomes, with an estimated completion of ≥50%, and an additional 2,786 bins, with estimated completion of 0–50%. We have submitted our results, including initial taxonomic and phylogenetic assignments, for the putative draft genomes to open-access repositories for the scientific community to use in ongoing research. |
format | Online Article Text |
id | pubmed-5507172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-55071722017-07-14 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology Tully, Benjamin J. Sachdeva, Rohan Graham, Elaina D. Heidelberg, John F. PeerJ Bioinformatics The Tara Oceans Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in the Mediterranean Sea, we have used current assembly and binning techniques to reconstruct 290 putative draft metagenome-assembled bacterial and archaeal genomes, with an estimated completion of ≥50%, and an additional 2,786 bins, with estimated completion of 0–50%. We have submitted our results, including initial taxonomic and phylogenetic assignments, for the putative draft genomes to open-access repositories for the scientific community to use in ongoing research. PeerJ Inc. 2017-07-10 /pmc/articles/PMC5507172/ /pubmed/28713657 http://dx.doi.org/10.7717/peerj.3558 Text en ©2017 Tully et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Tully, Benjamin J. Sachdeva, Rohan Graham, Elaina D. Heidelberg, John F. 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title | 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title_full | 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title_fullStr | 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title_full_unstemmed | 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title_short | 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology |
title_sort | 290 metagenome-assembled genomes from the mediterranean sea: a resource for marine microbiology |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507172/ https://www.ncbi.nlm.nih.gov/pubmed/28713657 http://dx.doi.org/10.7717/peerj.3558 |
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