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Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets

DNA logic circuits utilizing DNA hybridization and/or enzymatic reactions have drawn increasing attention for their potential applications in the diagnosis and treatment of cellular diseases. The compartmentalization of such a system into a microdroplet considerably helps to precisely regulate local...

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Autores principales: Yasuga, Hiroki, Inoue, Kosuke, Kawano, Ryuji, Takinoue, Masahiro, Osaki, Toshihisa, Kamiya, Koki, Miki, Norihisa, Takeuchi, Shoji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507272/
https://www.ncbi.nlm.nih.gov/pubmed/28700641
http://dx.doi.org/10.1371/journal.pone.0180876
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author Yasuga, Hiroki
Inoue, Kosuke
Kawano, Ryuji
Takinoue, Masahiro
Osaki, Toshihisa
Kamiya, Koki
Miki, Norihisa
Takeuchi, Shoji
author_facet Yasuga, Hiroki
Inoue, Kosuke
Kawano, Ryuji
Takinoue, Masahiro
Osaki, Toshihisa
Kamiya, Koki
Miki, Norihisa
Takeuchi, Shoji
author_sort Yasuga, Hiroki
collection PubMed
description DNA logic circuits utilizing DNA hybridization and/or enzymatic reactions have drawn increasing attention for their potential applications in the diagnosis and treatment of cellular diseases. The compartmentalization of such a system into a microdroplet considerably helps to precisely regulate local interactions and reactions between molecules. In this study, we introduced a relay approach for enabling the transfer of DNA from one droplet to another to implement multi-step sequential logic operations. We proposed electrical fusion and mechanical splitting of droplets to facilitate the DNA flow at the inputs, logic operation, output, and serial connection between two logic gates. We developed Negative-OR operations integrated by a serial connection of the OR gate and NOT gate incorporated in a series of droplets. The four types of input defined by the presence/absence of DNA in the input droplet pair were correctly reflected in the readout at the Negative-OR gate. The proposed approach potentially allows for serial and parallel logic operations that could be used for complex diagnostic applications.
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spelling pubmed-55072722017-07-25 Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets Yasuga, Hiroki Inoue, Kosuke Kawano, Ryuji Takinoue, Masahiro Osaki, Toshihisa Kamiya, Koki Miki, Norihisa Takeuchi, Shoji PLoS One Research Article DNA logic circuits utilizing DNA hybridization and/or enzymatic reactions have drawn increasing attention for their potential applications in the diagnosis and treatment of cellular diseases. The compartmentalization of such a system into a microdroplet considerably helps to precisely regulate local interactions and reactions between molecules. In this study, we introduced a relay approach for enabling the transfer of DNA from one droplet to another to implement multi-step sequential logic operations. We proposed electrical fusion and mechanical splitting of droplets to facilitate the DNA flow at the inputs, logic operation, output, and serial connection between two logic gates. We developed Negative-OR operations integrated by a serial connection of the OR gate and NOT gate incorporated in a series of droplets. The four types of input defined by the presence/absence of DNA in the input droplet pair were correctly reflected in the readout at the Negative-OR gate. The proposed approach potentially allows for serial and parallel logic operations that could be used for complex diagnostic applications. Public Library of Science 2017-07-10 /pmc/articles/PMC5507272/ /pubmed/28700641 http://dx.doi.org/10.1371/journal.pone.0180876 Text en © 2017 Yasuga et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Yasuga, Hiroki
Inoue, Kosuke
Kawano, Ryuji
Takinoue, Masahiro
Osaki, Toshihisa
Kamiya, Koki
Miki, Norihisa
Takeuchi, Shoji
Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title_full Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title_fullStr Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title_full_unstemmed Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title_short Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets
title_sort serial dna relay in dna logic gates by electrical fusion and mechanical splitting of droplets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507272/
https://www.ncbi.nlm.nih.gov/pubmed/28700641
http://dx.doi.org/10.1371/journal.pone.0180876
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