Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri

Whole-genome sequencing was performed for Lactobacillus parakefiri JCM 8573(T) to confirm its hitherto controversial taxonomic position. Here, we report its first reliable reference genome. Genome-wide metrics, such as average nucleotide identity and digital DNA-DNA hybridization, and phylogenomic a...

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Autores principales: TANIZAWA, Yasuhiro, KOBAYASHI, Hisami, KAMINUMA, Eli, SAKAMOTO, Mitsuo, OHKUMA, Moriya, NAKAMURA, Yasukazu, ARITA, Masanori, TOHNO, Masanori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMFH Press 2017
Materias:
Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510158/
https://www.ncbi.nlm.nih.gov/pubmed/28748134
http://dx.doi.org/10.12938/bmfh.16-026
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author TANIZAWA, Yasuhiro
KOBAYASHI, Hisami
KAMINUMA, Eli
SAKAMOTO, Mitsuo
OHKUMA, Moriya
NAKAMURA, Yasukazu
ARITA, Masanori
TOHNO, Masanori
author_facet TANIZAWA, Yasuhiro
KOBAYASHI, Hisami
KAMINUMA, Eli
SAKAMOTO, Mitsuo
OHKUMA, Moriya
NAKAMURA, Yasukazu
ARITA, Masanori
TOHNO, Masanori
author_sort TANIZAWA, Yasuhiro
collection PubMed
description Whole-genome sequencing was performed for Lactobacillus parakefiri JCM 8573(T) to confirm its hitherto controversial taxonomic position. Here, we report its first reliable reference genome. Genome-wide metrics, such as average nucleotide identity and digital DNA-DNA hybridization, and phylogenomic analysis based on multiple genes supported its taxonomic status as a distinct species in the genus Lactobacillus. The availability of a reliable genome sequence will aid future investigations on the industrial applications of L. parakefiri in functional foods such as kefir grains.
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spelling pubmed-55101582017-07-26 Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri TANIZAWA, Yasuhiro KOBAYASHI, Hisami KAMINUMA, Eli SAKAMOTO, Mitsuo OHKUMA, Moriya NAKAMURA, Yasukazu ARITA, Masanori TOHNO, Masanori Biosci Microbiota Food Health Note Whole-genome sequencing was performed for Lactobacillus parakefiri JCM 8573(T) to confirm its hitherto controversial taxonomic position. Here, we report its first reliable reference genome. Genome-wide metrics, such as average nucleotide identity and digital DNA-DNA hybridization, and phylogenomic analysis based on multiple genes supported its taxonomic status as a distinct species in the genus Lactobacillus. The availability of a reliable genome sequence will aid future investigations on the industrial applications of L. parakefiri in functional foods such as kefir grains. BMFH Press 2017-03-04 2017 /pmc/articles/PMC5510158/ /pubmed/28748134 http://dx.doi.org/10.12938/bmfh.16-026 Text en BMFH Press This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives (by-nc-nd) License. (CC-BY-NC-ND 4.0: https://creativecommons.org/licenses/by-nc-nd/4.0/)
spellingShingle Note
TANIZAWA, Yasuhiro
KOBAYASHI, Hisami
KAMINUMA, Eli
SAKAMOTO, Mitsuo
OHKUMA, Moriya
NAKAMURA, Yasukazu
ARITA, Masanori
TOHNO, Masanori
Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title_full Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title_fullStr Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title_full_unstemmed Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title_short Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
title_sort genomic characterization reconfirms the taxonomic status of lactobacillus parakefiri
topic Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510158/
https://www.ncbi.nlm.nih.gov/pubmed/28748134
http://dx.doi.org/10.12938/bmfh.16-026
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