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Novel Methods in Disease Biogeography: A Case Study with Heterosporosis
Disease biogeography is currently a promising field to complement epidemiology, and ecological niche modeling theory and methods are a key component. Therefore, applying the concepts and tools from ecological niche modeling to disease biogeography and epidemiology will provide biologically sound and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511963/ https://www.ncbi.nlm.nih.gov/pubmed/28770215 http://dx.doi.org/10.3389/fvets.2017.00105 |
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author | Escobar, Luis E. Qiao, Huijie Lee, Christine Phelps, Nicholas B. D. |
author_facet | Escobar, Luis E. Qiao, Huijie Lee, Christine Phelps, Nicholas B. D. |
author_sort | Escobar, Luis E. |
collection | PubMed |
description | Disease biogeography is currently a promising field to complement epidemiology, and ecological niche modeling theory and methods are a key component. Therefore, applying the concepts and tools from ecological niche modeling to disease biogeography and epidemiology will provide biologically sound and analytically robust descriptive and predictive analyses of disease distributions. As a case study, we explored the ecologically important fish disease Heterosporosis, a relatively poorly understood disease caused by the intracellular microsporidian parasite Heterosporis sutherlandae. We explored two novel ecological niche modeling methods, the minimum-volume ellipsoid (MVE) and the Marble algorithm, which were used to reconstruct the fundamental and the realized ecological niche of H. sutherlandae, respectively. Additionally, we assessed how the management of occurrence reports can impact the output of the models. Ecological niche models were able to reconstruct a proxy of the fundamental and realized niche for this aquatic parasite, identifying specific areas suitable for Heterosporosis. We found that the conceptual and methodological advances in ecological niche modeling provide accessible tools to update the current practices of spatial epidemiology. However, careful data curation and a detailed understanding of the algorithm employed are critical for a clear definition of the assumptions implicit in the modeling process and to ensure biologically sound forecasts. In this paper, we show how sensitive MVE is to the input data, while Marble algorithm may provide detailed forecasts with a minimum of parameters. We showed that exploring algorithms of different natures such as environmental clusters, climatic envelopes, and logistic regressions (e.g., Marble, MVE, and Maxent) provide different scenarios of potential distribution. Thus, no single algorithm should be used for disease mapping. Instead, different algorithms should be employed for a more informed and complete understanding of the pathogen or parasite in question. |
format | Online Article Text |
id | pubmed-5511963 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-55119632017-08-02 Novel Methods in Disease Biogeography: A Case Study with Heterosporosis Escobar, Luis E. Qiao, Huijie Lee, Christine Phelps, Nicholas B. D. Front Vet Sci Veterinary Science Disease biogeography is currently a promising field to complement epidemiology, and ecological niche modeling theory and methods are a key component. Therefore, applying the concepts and tools from ecological niche modeling to disease biogeography and epidemiology will provide biologically sound and analytically robust descriptive and predictive analyses of disease distributions. As a case study, we explored the ecologically important fish disease Heterosporosis, a relatively poorly understood disease caused by the intracellular microsporidian parasite Heterosporis sutherlandae. We explored two novel ecological niche modeling methods, the minimum-volume ellipsoid (MVE) and the Marble algorithm, which were used to reconstruct the fundamental and the realized ecological niche of H. sutherlandae, respectively. Additionally, we assessed how the management of occurrence reports can impact the output of the models. Ecological niche models were able to reconstruct a proxy of the fundamental and realized niche for this aquatic parasite, identifying specific areas suitable for Heterosporosis. We found that the conceptual and methodological advances in ecological niche modeling provide accessible tools to update the current practices of spatial epidemiology. However, careful data curation and a detailed understanding of the algorithm employed are critical for a clear definition of the assumptions implicit in the modeling process and to ensure biologically sound forecasts. In this paper, we show how sensitive MVE is to the input data, while Marble algorithm may provide detailed forecasts with a minimum of parameters. We showed that exploring algorithms of different natures such as environmental clusters, climatic envelopes, and logistic regressions (e.g., Marble, MVE, and Maxent) provide different scenarios of potential distribution. Thus, no single algorithm should be used for disease mapping. Instead, different algorithms should be employed for a more informed and complete understanding of the pathogen or parasite in question. Frontiers Media S.A. 2017-07-17 /pmc/articles/PMC5511963/ /pubmed/28770215 http://dx.doi.org/10.3389/fvets.2017.00105 Text en Copyright © 2017 Escobar, Qiao, Lee and Phelps. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Veterinary Science Escobar, Luis E. Qiao, Huijie Lee, Christine Phelps, Nicholas B. D. Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title | Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title_full | Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title_fullStr | Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title_full_unstemmed | Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title_short | Novel Methods in Disease Biogeography: A Case Study with Heterosporosis |
title_sort | novel methods in disease biogeography: a case study with heterosporosis |
topic | Veterinary Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511963/ https://www.ncbi.nlm.nih.gov/pubmed/28770215 http://dx.doi.org/10.3389/fvets.2017.00105 |
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