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Structure Prediction for Surface-Induced Phases of Organic Monolayers: Overcoming the Combinatorial Bottleneck
[Image: see text] Structure determination and prediction pose a major challenge to computational material science, demanding efficient global structure search techniques tailored to identify promising and relevant candidates. A major bottleneck is the fact that due to the many combinatorial possibil...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512157/ https://www.ncbi.nlm.nih.gov/pubmed/28640634 http://dx.doi.org/10.1021/acs.nanolett.7b01637 |
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author | Obersteiner, Veronika Scherbela, Michael Hörmann, Lukas Wegner, Daniel Hofmann, Oliver T. |
author_facet | Obersteiner, Veronika Scherbela, Michael Hörmann, Lukas Wegner, Daniel Hofmann, Oliver T. |
author_sort | Obersteiner, Veronika |
collection | PubMed |
description | [Image: see text] Structure determination and prediction pose a major challenge to computational material science, demanding efficient global structure search techniques tailored to identify promising and relevant candidates. A major bottleneck is the fact that due to the many combinatorial possibilities, there are too many possible geometries to be sampled exhaustively. Here, an innovative computational approach to overcome this problem is presented that explores the potential energy landscape of commensurate organic/inorganic interfaces where the orientation and conformation of the molecules in the tightly packed layer is close to a favorable geometry adopted by isolated molecules on the surface. It is specifically designed to sample the energetically lowest lying structures, including the thermodynamic minimum, in order to survey the particularly rich and intricate polymorphism in such systems. The approach combines a systematic discretization of the configuration space, which leads to a huge reduction of the combinatorial possibilities with an efficient exploration of the potential energy surface inspired by the Basin-Hopping method. Interfacing the algorithm with first-principles calculations, the power and efficiency of this approach is demonstrated for the example of the organic molecule TCNE (tetracyanoethylene) on Au(111). For the pristine metal surface, the global minimum structure is found to be at variance with the geometry found by scanning tunneling microscopy. Rather, our results suggest the presence of surface adatoms or vacancies that are not imaged in the experiment. |
format | Online Article Text |
id | pubmed-5512157 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-55121572017-07-18 Structure Prediction for Surface-Induced Phases of Organic Monolayers: Overcoming the Combinatorial Bottleneck Obersteiner, Veronika Scherbela, Michael Hörmann, Lukas Wegner, Daniel Hofmann, Oliver T. Nano Lett [Image: see text] Structure determination and prediction pose a major challenge to computational material science, demanding efficient global structure search techniques tailored to identify promising and relevant candidates. A major bottleneck is the fact that due to the many combinatorial possibilities, there are too many possible geometries to be sampled exhaustively. Here, an innovative computational approach to overcome this problem is presented that explores the potential energy landscape of commensurate organic/inorganic interfaces where the orientation and conformation of the molecules in the tightly packed layer is close to a favorable geometry adopted by isolated molecules on the surface. It is specifically designed to sample the energetically lowest lying structures, including the thermodynamic minimum, in order to survey the particularly rich and intricate polymorphism in such systems. The approach combines a systematic discretization of the configuration space, which leads to a huge reduction of the combinatorial possibilities with an efficient exploration of the potential energy surface inspired by the Basin-Hopping method. Interfacing the algorithm with first-principles calculations, the power and efficiency of this approach is demonstrated for the example of the organic molecule TCNE (tetracyanoethylene) on Au(111). For the pristine metal surface, the global minimum structure is found to be at variance with the geometry found by scanning tunneling microscopy. Rather, our results suggest the presence of surface adatoms or vacancies that are not imaged in the experiment. American Chemical Society 2017-06-22 2017-07-12 /pmc/articles/PMC5512157/ /pubmed/28640634 http://dx.doi.org/10.1021/acs.nanolett.7b01637 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Obersteiner, Veronika Scherbela, Michael Hörmann, Lukas Wegner, Daniel Hofmann, Oliver T. Structure Prediction for Surface-Induced Phases of Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title | Structure Prediction for Surface-Induced Phases of
Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title_full | Structure Prediction for Surface-Induced Phases of
Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title_fullStr | Structure Prediction for Surface-Induced Phases of
Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title_full_unstemmed | Structure Prediction for Surface-Induced Phases of
Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title_short | Structure Prediction for Surface-Induced Phases of
Organic Monolayers: Overcoming the Combinatorial Bottleneck |
title_sort | structure prediction for surface-induced phases of
organic monolayers: overcoming the combinatorial bottleneck |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512157/ https://www.ncbi.nlm.nih.gov/pubmed/28640634 http://dx.doi.org/10.1021/acs.nanolett.7b01637 |
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