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High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864
Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capability. Here we report the first draft genome sequence of A. niger ATCC 10864 strain. The g...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5514509/ https://www.ncbi.nlm.nih.gov/pubmed/28725336 http://dx.doi.org/10.1186/s40793-017-0254-2 |
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author | Paul, Sujay Ludeña, Yvette Villena, Gretty K. Yu, Fengan Sherman, David H. Gutiérrez-Correa, Marcel |
author_facet | Paul, Sujay Ludeña, Yvette Villena, Gretty K. Yu, Fengan Sherman, David H. Gutiérrez-Correa, Marcel |
author_sort | Paul, Sujay |
collection | PubMed |
description | Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capability. Here we report the first draft genome sequence of A. niger ATCC 10864 strain. The genome of A. niger ATCC 10864 is 36,172,237 bp long and comprise of 310 scaffolds with 49.5% average GC content. A total of 10,804 protein-coding genes were predicted among which 10,761 genes were with putative functions. A. niger ATCC 10864 genome coded for 709 putative carbohydrate active enzyme families distributed in six functional categories and among them glycoside hydrolases (GHs) represent the most number of families (279). Genes that include pepA, brlA, exgA, LaeA, rodA, GCN have also been identified in this study, which may play a role in biofilm formation. This high-quality draft genome sequence will facilitate our understanding of the mechanisms behind fungal biofilm formation and higher lignocellulolytic enzyme production. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0254-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5514509 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55145092017-07-19 High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 Paul, Sujay Ludeña, Yvette Villena, Gretty K. Yu, Fengan Sherman, David H. Gutiérrez-Correa, Marcel Stand Genomic Sci Short Genome Report Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capability. Here we report the first draft genome sequence of A. niger ATCC 10864 strain. The genome of A. niger ATCC 10864 is 36,172,237 bp long and comprise of 310 scaffolds with 49.5% average GC content. A total of 10,804 protein-coding genes were predicted among which 10,761 genes were with putative functions. A. niger ATCC 10864 genome coded for 709 putative carbohydrate active enzyme families distributed in six functional categories and among them glycoside hydrolases (GHs) represent the most number of families (279). Genes that include pepA, brlA, exgA, LaeA, rodA, GCN have also been identified in this study, which may play a role in biofilm formation. This high-quality draft genome sequence will facilitate our understanding of the mechanisms behind fungal biofilm formation and higher lignocellulolytic enzyme production. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0254-2) contains supplementary material, which is available to authorized users. BioMed Central 2017-07-17 /pmc/articles/PMC5514509/ /pubmed/28725336 http://dx.doi.org/10.1186/s40793-017-0254-2 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Paul, Sujay Ludeña, Yvette Villena, Gretty K. Yu, Fengan Sherman, David H. Gutiérrez-Correa, Marcel High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title | High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title_full | High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title_fullStr | High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title_full_unstemmed | High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title_short | High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864 |
title_sort | high-quality draft genome sequence of a biofilm forming lignocellulolytic aspergillus niger strain atcc 10864 |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5514509/ https://www.ncbi.nlm.nih.gov/pubmed/28725336 http://dx.doi.org/10.1186/s40793-017-0254-2 |
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