Cargando…

Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings

We developed a new method of using seedling trays to evaluate root angle distribution in rice (Oryza sativa. L), and found a wide genetic variation among cultivars. The seedling tray method can be used to evaluate in detail the growth angles of rice crown roots at the seedling stage by allocating ni...

Descripción completa

Detalles Bibliográficos
Autores principales: Tomita, Asami, Sato, Tadashi, Uga, Yusaku, Obara, Mitsuhiro, Fukuta, Yoshimichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Breeding 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5515312/
https://www.ncbi.nlm.nih.gov/pubmed/28744171
http://dx.doi.org/10.1270/jsbbs.16185
_version_ 1783250973401022464
author Tomita, Asami
Sato, Tadashi
Uga, Yusaku
Obara, Mitsuhiro
Fukuta, Yoshimichi
author_facet Tomita, Asami
Sato, Tadashi
Uga, Yusaku
Obara, Mitsuhiro
Fukuta, Yoshimichi
author_sort Tomita, Asami
collection PubMed
description We developed a new method of using seedling trays to evaluate root angle distribution in rice (Oryza sativa. L), and found a wide genetic variation among cultivars. The seedling tray method can be used to evaluate in detail the growth angles of rice crown roots at the seedling stage by allocating nine scores (10° to 90°). Unlike basket methods, it can handle large plant populations over a short growth period (only 14 days). By using the method, we characterized the root angle distributions of 97 accessions into two cluster groups: A and B. The numbers of accessions in group A were limited, and these were categorized as shallow rooting types including soil-surface root. Group B included from shallow to deep rooting types; both included Indica and Japonica Group cultivars, lowland and upland cultivars, and landraces and improved types. No relationship between variation in root vertical angle and total root number was found. The variation in root angle distribution was not related to differentiation between the Japonica and Indica Groups, among ecosystems used for rice cultivation, or among degrees of genetic improvement. The new evaluation method and associated information on genetic variation of rice accessions will be useful in root architecture breeding of rice.
format Online
Article
Text
id pubmed-5515312
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Japanese Society of Breeding
record_format MEDLINE/PubMed
spelling pubmed-55153122017-07-25 Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings Tomita, Asami Sato, Tadashi Uga, Yusaku Obara, Mitsuhiro Fukuta, Yoshimichi Breed Sci Research Paper We developed a new method of using seedling trays to evaluate root angle distribution in rice (Oryza sativa. L), and found a wide genetic variation among cultivars. The seedling tray method can be used to evaluate in detail the growth angles of rice crown roots at the seedling stage by allocating nine scores (10° to 90°). Unlike basket methods, it can handle large plant populations over a short growth period (only 14 days). By using the method, we characterized the root angle distributions of 97 accessions into two cluster groups: A and B. The numbers of accessions in group A were limited, and these were categorized as shallow rooting types including soil-surface root. Group B included from shallow to deep rooting types; both included Indica and Japonica Group cultivars, lowland and upland cultivars, and landraces and improved types. No relationship between variation in root vertical angle and total root number was found. The variation in root angle distribution was not related to differentiation between the Japonica and Indica Groups, among ecosystems used for rice cultivation, or among degrees of genetic improvement. The new evaluation method and associated information on genetic variation of rice accessions will be useful in root architecture breeding of rice. Japanese Society of Breeding 2017-06 2017-05-10 /pmc/articles/PMC5515312/ /pubmed/28744171 http://dx.doi.org/10.1270/jsbbs.16185 Text en Copyright © 2017 by JAPANESE SOCIETY OF BREEDING http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Tomita, Asami
Sato, Tadashi
Uga, Yusaku
Obara, Mitsuhiro
Fukuta, Yoshimichi
Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title_full Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title_fullStr Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title_full_unstemmed Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title_short Genetic variation of root angle distribution in rice (Oryza sativa L.) seedlings
title_sort genetic variation of root angle distribution in rice (oryza sativa l.) seedlings
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5515312/
https://www.ncbi.nlm.nih.gov/pubmed/28744171
http://dx.doi.org/10.1270/jsbbs.16185
work_keys_str_mv AT tomitaasami geneticvariationofrootangledistributioninriceoryzasativalseedlings
AT satotadashi geneticvariationofrootangledistributioninriceoryzasativalseedlings
AT ugayusaku geneticvariationofrootangledistributioninriceoryzasativalseedlings
AT obaramitsuhiro geneticvariationofrootangledistributioninriceoryzasativalseedlings
AT fukutayoshimichi geneticvariationofrootangledistributioninriceoryzasativalseedlings